Agrobacterium rubi: G6M88_02195
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Entry
G6M88_02195 CDS
T08058
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arui
Agrobacterium rubi
Pathway
arui03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G6M88_02195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arui03400
]
G6M88_02195 (mfd)
Enzymes [BR:
arui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G6M88_02195 (mfd)
DNA repair and recombination proteins [BR:
arui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G6M88_02195 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
SecA_DEAD
Glyco_tran_WecG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTF99284
LinkDB
All DBs
Position
1:complement(452473..455970)
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AA seq
1165 aa
AA seq
DB search
MIAGFDVRLVASADTPLTIGNVPSGTEAFLLADLARQGTPVAYVLSDGQRVADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSAHVSARRLATLSGLIHHQKKPHPAIVLVTVNAMLQK
MAPRDVIESLAFSAKPGNQIRMDDIAARLERNGFDRVATVREVGEFALRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEHLETAFDYLKGFRIVTDHTAREAAVERSKL
VHDYFEARQQSGQTKGATQGAPYKPVSPSQIYLGGKSFDEALNAVNAVRLTPFNEQDSKD
KPVATLDAHVGPRWAKSQTESESEERINVFTLAVKHIAERRSKGWKVLITGWSEGSLDRM
LQVLNEHGLENIKTIQSFKEVEKLGKGEAAAAVLSLEAGFETGNLAVIGEQDILGDRMVR
RSKRRKRGADFISEVAGLDEGSLVVHAEHGIGRFVGLRTIEAAGAPRDCLELHYADEAKL
FLPVENIDLLSRYGSDAAEANLDKLGGGAWQMRKAKLKKRLLDMAGDLIRIAAARMVRHA
PTLIAPDGLYDEFAARFPYDETEDQLNAIESVREDLGAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGTKELALTKKEVA
EGKTDIVVGTHALLGAGINFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTAPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGEDDVIDSGWSPQ
ISVGTSVMIPENYVPDLHLRMGLYRRLGELTDLNEIDGFGAEMIDRFGPLPKEVQHLLKI
VYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGSMAKIRPDHSVFLTR
DLPTPEKRLAGAAMVMTQLAELAKS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgtcaggctggtggcatcggccgatacgccgttgaccattggc
aacgtgccctccggcacggaagcctttttgctcgcggatttggcacggcagggcacgccc
gtggcctatgtgctctccgatggtcagcgcgtggccgatctggagcagatgctgggcttc
gttgcgcctgacattccggttctgacattgcctgcctgggattgccttccctatgaccgc
gtgtcgcccagcgcgcatgtctcggcgcgccgtcttgcgacgctctccggcctcatccac
catcagaaaaagccgcatccggccatcgttctcgtcaccgtcaatgccatgctgcagaag
atggcaccgcgcgatgtcatcgagagccttgcgttttcggccaagcccggcaaccagatc
cgaatggacgacattgctgcccggctggagcgcaacggcttcgaccgcgtggcgacggtg
cgcgaagtgggcgagttcgccctgcgcggcggcattctcgatgttttcgttcccggcacg
gaagagccggtgcggctggatttcttcggcgatacgctggagagcatccgtaccttcgat
ccagccagccagcgcaccatcggccaggcgcgttcgctcgatctgaacccgatgagcgag
gtgacgctgacaccggatacgatcagccgtttccgcaagaactatctttcgctgtttggc
gcggcgacacgggatgacgcgctgtatcaggccgtgtccgagggccgccgttatgccggc
atggagcattggctgccgctgttttacgagcatctggaaacggccttcgattatctcaag
ggcttccgcatcgttaccgaccacacggcgcgtgaggctgccgtcgaacgctccaagctg
gtgcatgattatttcgaggcacggcagcaatccggccagacgaaaggcgcaacgcagggc
gcgccctacaagcccgtctcacccagccagatttatcttggcggcaagagcttcgatgag
gcgctgaatgccgtcaacgcggtacgcctgacgccgttcaatgagcaggattccaaggac
aagccggtcgccacgctggatgcccatgtcggcccgcgctgggcaaaatcgcagacggag
agcgagagcgaagagcgcatcaacgtgtttacgctggccgtcaagcacattgccgagcgc
cgctccaagggctggaaggttctgatcacgggctggtcggaaggttctctcgaccgcatg
ttgcaagtgctgaacgagcatgggcttgagaacatcaagaccatccagtcattcaaggaa
gtcgaaaagctcggcaagggcgaggctgccgctgcggtgctcagccttgaggccggtttc
gaaaccggcaatctcgccgtcatcggtgaacaggatattctcggcgaccgcatggtgcgc
cgttccaagcgccgcaagcgcggggcggatttcatctcggaagtcgccggtctggatgag
ggttcgctcgtcgttcacgccgaacacggtatcggtcgcttcgtcggtcttcgcaccatc
gaggccgcaggtgcgccgcgggattgcctcgagctgcattatgccgatgaggccaagctg
ttcctgccggtcgaaaacatcgatcttctgtcacgttacggctcggatgcggcggaagcc
aatcttgacaagctgggtggcggcgcatggcagatgcgcaaggccaagctcaagaagcgc
ctgctggatatggcgggtgatctcatccgcattgcagcggcccgcatggtgcgccacgca
ccgacgctgattgcgccggatggactctacgatgaattcgctgcccgttttccctatgac
gagacggaagatcagctcaacgccatcgaatccgtgcgcgaagatctgggtgccggtcgc
cccatggatcgcctgatctgcggtgacgtcggctttggcaaaacggaagtggcgttgcgc
gccgcgttcctcgcggccatgaacggtgtgcaggtggcggtggtggtgccaacaacgctg
ctggcgcgccagcatttccgcaccttctccgaacgcttccgtggcttgccgatccgcgtg
cagcaggcatcgcgtcttgttggcacgaaggaactggcgctgacgaaaaaggaagtagcc
gagggcaagacggatatcgtcgttggcacccatgcgttgctcggcgctggcatcaatttc
gccaatcttggcctgctcatcatcgatgaggaacagcattttggcgtgaagcataaagag
cgtctgaaagagctgaagagcgatgtgcatgtgctgacgctgtcggccacgcccattccg
cgcaccttgcagcttgcgatgacgggtgttcgggaactgtcgctgatcaccaccgcgccg
gtggaccgcatggccgtgcgcacgttcatttcgcccttcgatgcgctggtcatcagggaa
acgttgatgcgcgagcattatcgcggtggccagagtttttatgtctgcccgcgtctcgct
gatctcgccgatattcacgccttcctgcaatccgatgtgcctgaactgaaggttgccgtg
gcccacggccagatggcggcgggtgagctggaagacatcatgaacgccttctatgacggc
aaatatgacgtgctgctttccaccaccatcgttgaatccgggctggacgtgccgacagcc
aatacgctgattgtccaccgtgccgatatgttcggccttgcgcagctttaccagctgcgc
ggtcgcgtcgggcgctccaaggttcgcgccttcgcgttgttcacgttgccggtcaacaag
gtgctgacaaccatggcggaacgccgcctgaaggttctgcaatcgcttgatacgctgggt
gcgggcttccagcttgccagccacgatctggacattcgcggcgctggcaatctgctgggc
gaagaacagtccggccacatcaaggaagtcggttttgagctttaccagcagatgctggaa
gaggccgtggccgaagtgaagggcgaggacgacgtcatcgacagcggctggtcgccgcag
atttctgtcggtacatcggtcatgatcccggaaaattacgttccggatttgcacctgcgc
atgggcctttaccgtcgcctcggcgagttgaccgatctgaacgaaatcgatggcttcggt
gccgaaatgatcgaccggttcggtccgttgccgaaggaagtgcagcacctgctcaagatc
gtctacgtcaagtcgctctgccgcacggccaatgtcgaaaagctggatgccgggccgaag
ggcgtcgtcgtacagttccgcaacaaggagttcccgaaccctgcagctctcgtcggctac
atcgccaagcagggctccatggccaagatcaggcctgaccatagcgtgttcctgacccgc
gatctgccaacgccggagaagcgtttggcgggtgcagccatggtgatgacccagctggcg
gaactggcgaaatcctga
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