Acipenser ruthenus (sterlet): 117401385
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Entry
117401385 CDS
T07327
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03013
Nucleocytoplasmic transport
arut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117401385
03015 mRNA surveillance pathway
117401385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117401385
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117401385
5.6.2.5 RNA 5'-3' helicase
117401385
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117401385
mRNA cycle factors
Common to processing body (P body) and stress granule
117401385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
117401385
NCBI-ProteinID:
XP_033857914
LinkDB
All DBs
Position
39:6824591..6856609
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGAVDDAAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIANFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMSTAMYDAREALIPGSVYDRNNQGRPSNMYFQTHDQIGMIGAGPSHVAAM
NIPIPFNLMMPPIPPPGYFGQANGPAAGRGALKGKAGRGGRQRNRGIGNQGNSQCNLPNS
QASQDAVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagactctcaccttcctggacacggaggaa
gcggagctgctgggagctgacacgcagggatcggagttcgagtttactgacttcactctg
ccgagtcagacccagacccaggggcagactcagagccagctggacaatcaggttaatggt
cctgatggagtactgcagaatggggcagttgatgatgcagctaaagcaagccaacttctt
gctgaactgaattttgaagaagatgaggaggatacctattacaccaaggaccttccagtg
catgcctgcagctactgtggaatacatgacccggcctgcgtggtttactgcaataccagt
aagaagtggttctgtaatggacgaggaaatacttcgggcagccacattgtgaaccacctt
gtcagagcgaaatgtaaagaagtgactctgcataaagatggcccgcttggggagactgtc
ttggagtgttacaactgtgggtgtcgcaacgtctttcttttgggcttcatccctgccaag
gctgattctgttgttgtactgctgtgcagacagccctgtgccagtcaaagcagcctgaag
gatatcaactgggacagttctcagtggcagcctctgatccaagaccgctgcttcctttcc
tggctggtaaagattccttctgagcaggagcagctgagagcaaggcagatcacagctcag
cagatcaacaaactggaggagctctggaaggaaaacccttcagccactcttgaggatctg
gagaaacctggagtggatgaggagccacagcatgttctactccgctatgaagatgcctac
cagtaccagaacatcttcggaccgcttgtcaagctggaggcggactatgacaagaaactc
aaggaatctcagacacaggataatataactgtgaggtgggacctgggtctcaacaaaaag
cgaattgccaacttctctttgccgaagactgactcaggtgacatgcgtttaatgcaagga
gatgagatttgtctgaggtacaaaggagacctggctcccttgtggaaaggaattggacat
gtcatcaaagttccagacaattatggagatgaaattgctattgagttgagaagcagcgtt
ggtgcccccgtcgaagttcctcacaatttccaggtcgactttgtttggaaatcgacttcc
tttgacaggatgcaaagtgctctgaaaacctttgcagtggatgagacctctgtttctgga
tacatttaccataaactgctggggcacgaagtggaagatgtcatcataaagtgtcagctg
ccgaagcgcttcactgcccatgggctccctgaccttaaccattctcaggtttatgcagtg
aagactgtacttcagcgtcctctcagccttattcagggccccccagggacaggaaaaact
gttacatctgctaccattgtgtaccatctggccaggcagggcaatggaccagtgctcgtc
tgtgctccaagtaacattgctgtggatcagctgactgagaaaattcaccagactggactt
aaagttgtaaggctttgtgctaagagcagggaagccattgattctcctgtatctttcttg
gcattgcacaaccaaatccgtaacatggatagtatgcctgaacttcagaagttgcaacag
ctgaaagatgaaactggggaattgtcctctgcagatgagaagcgctatcgagcattgaag
cgcacggctgaaagggagctgctgatgaatgctgatgtgatctgctgcacctgtgttgga
gccggggacccacgtttagctaaaatgcaattccgctcaattctgattgatgagagtacc
caagctactgaacctgaatgcatggtgcctgtggtgctgggagcaaaacagttgatcctt
gttggtgatcattgccagctaggtcctgttgtcatgtgtaagaaagcagccaaagcaggc
ctgtcccagtctctgtttgaacggctggtggtgctggggatccgtcccattcgtttgcaa
gtacagtaccgtatgcacccagcactcagtgcctttccatccaacatcttctatgagggc
tcccttcagaacggagtcactgcagctgaccgcattaagaaggggtttgacttccaatgg
ccacagccagacaagcccatgttcttctatgtaactcaagggcaggaagaaattgcaagc
tcaggaacttcctatttgaacagaactgaagctgctaatgtggaaaagatcaccacaaag
cttctgaaagcaggagccaaaccagaccagattggaattattacaccctatgagggtcag
cgctcttacttggtgcagtacatgcagttcagtggctctctgcacactaaactttatcag
gaggttgagattgccagtgtggatgctttccaaggacgtgaaaaagacttcatcattctg
tcttgtgtcagagctaatgaacatcagggtataggattcttaaatgatcccaggcgtctc
aatgtggctcttactagggcaaggtatggtgtgattattgttggcaaccccaaggctttg
tccaagcagcctctctggaaccaccttctgaactattacaaggagcagaaggtcctggtt
gaggggccgctgaacaatctgcgagagagcctcatgcagttcagcaagcctcgcaagctg
gtcaatactataaatccaggagcacggtttatgagtacagctatgtatgatgccagggaa
gcgctcatcccaggatcagtgtacgaccggaacaaccaggggcgcccttcaaatatgtac
tttcagacccacgatcagattggaatgattggtgctggtcccagccatgttgctgcaatg
aacattcccatccccttcaatctcatgatgccacccatacctcccccaggatacttcggc
caggctaatggcccggcagcaggcaggggagcactgaaggggaaggctggccggggagga
cgccagagaaatcgtggcattggcaatcagggaaatagccagtgcaacctgcctaacagc
caggccagtcaggacgctgtgtcccagccgttttcacagggtccgctgactcagggctac
atctctatgagccagccatctcaaatgagccagccaggcctttctcagccagaattgtcg
caggacagttatttgggtgatgaattcaagtcccagattgatgtggcgttgtcacaggat
tctacttaccagggtgaacgtgcttaccaacatggcggggtgactggactgtcacagtac
tag
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integrated database retrieval system
