Acipenser ruthenus (sterlet): 117405266
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Entry
117405266 CDS
T07327
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117405266 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arut03400
]
117405266 (lig4)
Enzymes [BR:
arut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117405266 (lig4)
DNA repair and recombination proteins [BR:
arut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117405266 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
117405266
NCBI-ProteinID:
XP_033864085
LinkDB
All DBs
Position
9:complement(23186796..23191895)
Genome browser
AA seq
911 aa
AA seq
DB search
MAAAVQSVSSPQTTVASQVPFAHLCSTLEKIQKARPRPEKTKHFKDFLDSWRKFHEALHV
NAPNTTDSFYPAMRLILPQLERERMAYGIKENMLAKLYIEVLGLPKDGGDANKLLNYRAP
TTSQGDAGDFAVVAYFVLKTRCPAQGNLTIQQVNDFLDSVANNNASKRKDLVKKSLLQLI
AQSSALEQKWLIRMILKDMKLGISKETVLQMFHADATELHNVTTDLEKVCRQLHDPSVSL
SDVSIGLFSAFKPMLAGVANIKRIEKQMNNQSFYIETKLDGERMQLHKDGDVYKYYSRNG
YEYTQQFGTSPLEGSLTPFIHNVFKVNIVNCILDGEMMAYNPTTQTFMQKGNKFDIKRMV
DDSELQTCFCVFDVLLVNGQKLAHETLRKRYETLQTVFTPIEGRIHIVPKIDARTNQEVV
NALNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGL
RGGMMSHFLCALAETPPPGEKPSVFHSFCRIGSGYTMKELYDLGLKLANHWKPYHKKNPP
ASILCGTEKPEVYIDPCNSVIVQVKAAEIVDSDMYKTECTLRFPRIEKIRDDKEWYECMT
LKDLDSFRDKASGKLASRHIHLSDDLPEKKKRKLAPKPRKVIGVIDHFKPQDLSSVTKVT
DIFEDVEFCVISGNEDHSKAELEKGIAECGGVVVQNPGKETYCIIAGIENMRVKNLISAN
QYDVVQINWLLECLKRKECMPWQPSHMIHMSPSTKQHFAKEYDCFGDSYYADTDKEQLKE
VFRRINKTEAKIPLVAIADIEQRFSWDEVPTSMFRQYQVYVDCYSVIGDLGSLICGTSLE
IRALELRFYGANVVSKLVEGVSHVVIGDQARVLELKALRRKFAVKFKIVSELWVVESVSE
GHLLNDNDYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagcagtgcaatcagtgtcctcgcctcagactacagtcgcatctcaagttcct
tttgctcacctgtgttcaactttagaaaaaatacagaaagccagaccaagaccagagaaa
acaaaacattttaaagactttctggattcttggagaaagttccatgaggctcttcatgtg
aatgctccaaataccacagactcattctacccagcaatgcgtctcattctcccccaatta
gaaagggagagaatggcatatgggatcaaggaaaatatgcttgctaagctttacatagaa
gttttaggtctaccaaaagatggaggggatgcaaacaagcttctgaactatagagctcct
acaacctcacagggagacgctggggactttgctgttgttgcgtactttgttcttaagacc
aggtgcccagctcaaggaaacttaacaatacagcaggtcaatgatttcttggattctgtt
gccaataataatgctagcaaaagaaaagacttagtaaaaaagagcttgctacagctaata
gctcagagttctgccctggagcaaaagtggctaatccgtatgattcttaaagacatgaaa
ttgggcattagtaaagaaactgtgcttcagatgtttcatgcagatgcaactgaattacac
aatgtgaccacagatctagaaaaggtatgcagacaacttcatgacccatcagtttctctc
agtgatgtctctattgggcttttctcagcatttaagcccatgctggctggtgttgcaaac
ataaagcgaattgaaaagcaaatgaataaccagagtttctacattgaaacaaagcttgac
ggtgagcgcatgcagttgcacaaagacggggatgtatataaatattactcccgcaatggg
tatgagtatacgcagcaatttggaacctctccattggaaggttctttaactccatttatc
cataatgtcttcaaggtcaatattgtaaactgcattttagatggtgagatgatggcttat
aatcccactactcagaccttcatgcaaaaaggcaacaagtttgacataaaaagaatggtt
gatgattcagaattgcaaacctgtttttgcgtgtttgatgtgctgttggtaaatggccag
aaactggcccatgagacactccgaaaacgatacgagacccttcagaccgtctttactccc
atagagggcaggatacatattgtacccaaaattgacgcaaggactaatcaggaagttgtt
aacgccctgaatgaagcaattgacaaccgagaggaaggaatcatggttaaggaccccatg
tctatttacaaaccagataagcgtggggaagggtggctgaaaattaaaccagagtatgta
gatggtttgatggatgaacttgacatcttgattgttgggggatattgggggaagggctta
cgaggtggaatgatgtcccattttttgtgtgctctagccgaaacccctccacctggagaa
aagccgtcagtgtttcactctttttgccgtattggttcaggatacactatgaaggagctt
tacgaccttggcttaaaactggcaaatcactggaaaccctaccacaagaaaaaccctcca
gcttctattttatgtggtactgaaaagccagaggtgtacattgatccgtgcaattctgtg
atcgttcaggtaaaggctgccgaaattgttgatagtgatatgtataaaaccgagtgcact
ctgcgttttccaagaatagaaaaaataagggatgacaaggagtggtacgagtgcatgacc
ctgaaagatttggacagttttcgtgataaagcctcaggaaagctggcatccaggcatatt
catttgagtgatgacctaccagaaaagaagaaaaggaaacttgcacccaaaccaaggaaa
gtgattggtgtaattgatcatttcaagccccaggacctttccagtgtcaccaaagttact
gacatatttgaggatgttgagttttgcgtcataagtggaaatgaggatcattcaaaagca
gagcttgaaaaaggaattgctgaatgcggtggggttgttgtccaaaaccctgggaaagaa
acatactgcattattgctggcatagaaaacatgagggtgaaaaatcttatctctgcaaat
cagtatgatgttgtacaaatcaactggcttttggagtgtctgaaaaggaaggagtgcatg
ccgtggcaacccagtcacatgatccatatgtccccgtctacaaagcagcactttgcaaaa
gaatatgattgcttcggggacagttattatgcagacactgacaaagagcaattaaaggaa
gtatttaggaggattaataagacagaagcgaagatacctttggttgccattgcagatata
gaacagagattttcatgggatgaagtgccaacaagcatgttcagacagtaccaagtttat
gttgattgttattctgtcattggtgatcttggaagcttaatctgtggaacaagtttggaa
ataagggctcttgagctcagattttatggggctaatgttgtctccaagcttgtggaagga
gtttcacacgttgtcattggtgatcaagcccgtgttctcgagctgaaggctctgaggaga
aagtttgctgtgaagtttaagatagtgtcagaattatgggttgtggaatcagtaagtgaa
ggacatttgttgaatgacaatgattacttagtttaa
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