Acipenser ruthenus (sterlet): 117412163
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Entry
117412163 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04510
Focal adhesion
arut04512
ECM-receptor interaction
arut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117412163
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117412163
09142 Cell motility
04820 Cytoskeleton in muscle cells
117412163
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arut04147
]
117412163
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117412163
Exosome [BR:
arut04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117412163
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117412163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117412163
NCBI-ProteinID:
XP_034758536
LinkDB
All DBs
Position
20:complement(11719553..11756403)
Genome browser
AA seq
1419 aa
AA seq
DB search
MLGHLVHRGLQGNQAIQVPLVVQRVRKGSWVKQEKRGKPGKDGDPGEPGFPGQPGDPGLP
GLPGRDGELGEKGDRGYPGPPGIVVSDPSSVGQKGDHGFPGFPGQKGESGLPGLQGPPGQ
PGSPGLVLPGNRGPPGYPGERGQKGDEGPPGVSRPGPPGIDGRPGDPGRAGPPGLPGTAG
TTPDVLCMPGPTGLPGQVGERGFPGEAGQKGVKGDTCIDCFGDSEIVPGPPGPPGLPGTP
GVPGFNGQKGDRGFPGGTGPVGPPGLPGMPGTPGFPGPKGDPGTAIALPGMKGDKGDSGF
PGSPGLPGLDGTPGRDGQPGSPGAKGDPGSVAFKGERGLPGDPGPSGFPGERGPMGPPGF
GPQGSPGEKGVQGVSGRPGSPGAPGSKGDSGQTMSEPGSPGPRGPPGDPGFPGSPGVSGQ
PGQPGFPGVGGQKGDPGPPGIGLPGLAGQKGFPGTPGPPGQPGNPGRPGLDGFPGTPGSP
GPKGEPGFGLPGPPGLPGTPGSKGFPGPKGDPGFPGSPGQPGGPGFNGTPGPKGDGGIPG
TPGTRGPPGPPGIGIQGPPGPSGPPGPVGPPGFPGRNGEKGDPGPPGLDIPGPPGDRGSP
GFPGAPGQLGSSGPPGAPGRDGLPGLPGAKGEMGVMGTPGPQGPPGNPGANGFPGPKGDD
GYPGQKGTPGFPGGKGDKGESGLPGPPAQVDPGQQYKGQKGNSGLPGSPGLPGQKGFPGL
TGDPGLPGQDGLPGLPGPGGPKGDPGTPGQPGSSGIPGQKGVMGEMGFPGPSGTKGSPGG
PGRPGQPGQPGSPGFRGEKGDPGLPGVGVPGFQGPKGDPGQPGFPGSPGSKGSAGTPGLP
GLPGSPGVKGDPGLPGFQGASGIPGPKGLDGAPGSPGLSGPPGRPGSPGSPGGPGLPGEK
GQAGRDGIPGPAGNKGDPGQPGFGRPGSPGLPGLPGSKGDPGFPGTPGSNGFPGQKGELG
FPGLPGPLGPPGPPGPPGQPREGPKGNPGLLGPPGRSGQPGREGPPGPPGSGGVKGEKGN
PGGPGQPGFPGLKGETGPPGFSGTPGIPGRSGQKGDTGFPGVPGFPGMKGHPGTPGGIGL
TGDPGIPGPEGPRGPPGPVSAPITLKGERGFPGPPGQPGSRGPPGPPGQSGLPGPIGQSG
DPGREGLPGFDGPSGRKGDTGPSGQPGQRGFNGPPGPDGLQGPPGPSGSASVAHGFLITR
HSQSEDVPQCPTGTSSIYDGYSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNV
CNFASRNDYSYWLSTPQPMPMSMAPVTGESIQPFISRCSVCEAPAMVIAVHSQTIQIPSC
PQGWSSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSSPFIECHGRGTCNYYANSYS
FWLATVELSEMFSKPQSETLKVGNLGSRVSRCHVCMKRT
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgctgggtcacctggtccaccgggggctccagggcaaccaggctatccaggtccccctg
gtggtccaaagggtgagaaaggggagctgggtgaagcaggaaaagagggggaagcctggc
aaagatggtgatcctggtgaaccaggttttccgggtcagccgggggatcctggattacct
gggctaccaggaagagacggcgagctgggggagaagggtgaccgtggttaccctggccct
cctggaattgttgtcagtgaccctagttcagttggacagaaaggcgatcatggattccca
ggattccctgggcagaagggtgaaagtggattgcctggtttgcaaggtcctcctggtcag
cccggttctcctggcctggttctgcctggcaaccgtggtccgcctggctaccccggagag
cgcgggcagaagggagacgagggcccgcctggagtttctcgtcccggccctcctgggatc
gatgggagacctggagatcctggccgtgctggcccgccgggccttccagggactgcaggc
accactccagatgtcctgtgcatgcccggtcctactggcttacctgggcaggtgggggag
cgaggatttcctggagaggcaggacagaaaggtgtaaagggcgatacctgcatcgactgc
tttggtgactctgaaatagtgcctggtcccccaggacccccaggactaccagggacccca
ggggttcctggattcaacgggcagaaaggagacagagggttcccaggtggaacggggcct
gtgggtcctccaggtttgcccggcatgccaggcactcctggttttcctggtcctaaaggt
gatcccggcactgccatcgcgctccccgggatgaagggcgacaaaggagactcgggattc
ccggggtcaccgggcctgcctgggttggatgggacgccaggtcgggacggccagccagga
agtcccggagccaaaggggatcccggttctgttgcattcaaaggagaaagaggtcttcca
ggggatccaggaccttcaggtttccctggggagaggggtccgatgggccctccaggattc
gggccccagggttccccaggagagaagggggtccagggtgtgtctggtcgtccgggctct
cccggagctccaggttctaaaggagactccggccaaacaatgtcagaaccgggctctcct
gggccaagagggccgccaggagatcccgggtttccagggagtccaggtgtatcaggacag
ccaggacagccaggcttcccaggcgtgggaggacagaagggtgaccccggccccccgggt
ataggtcttccaggactcgccggacaaaaaggcttcccaggaacacccggcccacccgga
caaccaggaaacccaggcagaccaggcctcgatgggttccctgggacaccaggctccccc
ggacccaagggagagccaggctttggccttcctggacctccaggcctcccaggaactcca
ggatcgaagggattcccaggacccaagggagaccctggattccctggatcccctggccag
ccagggggcccaggcttcaatggaacaccagggcctaaaggtgacggtggtattcctggc
acaccaggaacccgtggccccccaggccccccagggattggtattcagggcccccccgga
ccttcagggccccccggacctgtcggcccaccaggatttccaggcaggaacggagagaag
ggtgaccccggcccccctgggctggacatccctggcccccctggtgaccgtggtagcccc
ggcttccctggagctccaggccagctgggatcctcaggcccgcccggcgcgcccggcaga
gacggactgccgggactgccaggtgcgaagggtgaaatgggtgtgatgggaacaccaggc
ccacagggacccccaggcaaccctggagccaatggattccccggacccaaaggtgacgat
ggctatcccggtcagaaaggaacccctggattccctggagggaaaggggacaagggtgaa
tcgggcctgcctggccctcctgcacaagtggaccccggtcagcagtacaaggggcagaaa
ggaaactcgggcctgccaggctcgcctggtttgcctggtcagaagggcttccccggtcta
actggtgaccctggattgccagggcaggatggtctcccgggattaccaggtccaggaggt
cccaaaggagacccaggaacccctggccagcctggatccagtggcattccaggacagaag
ggtgtcatgggagagatgggcttccctggtccttctggtactaaaggttctcctggagga
ccaggaaggccaggccagcccggacagccaggcagccctgggtttagaggggaaaagggg
gaccctggtctgcccggtgtgggagtgccaggttttcaaggccccaagggtgatccaggc
cagcccggattccctggttcccccgggtcgaagggctcagcgggcacccccggtctgcca
ggactgccagggagccccggggtgaagggagaccccggcctgccaggattccagggtgcc
tctgggatccccggtccgaagggtcttgatggagctccgggttcccctggtctcagtggc
ccccctggacggcctggctcgccaggcagcccaggaggtccaggtctccccggagagaag
ggacaagctggacgggacggcattccagggcccgccggaaacaaaggagaccccggtcag
cctggtttcggacgtcctggatcccccggtctcccaggattgccaggctcaaagggagat
cctggtttccctggcaccccaggtagcaatggctttccaggtcagaaaggtgaactagga
ttcccaggtttgcctggtccgctaggcccccccggtccccctggccccccaggccagcct
cgagaaggacccaaggggaacccaggattattgggcccccctgggaggagtggtcaacca
ggtcgagaaggcccccccgggcccccaggcagcggtggagtgaagggagagaagggcaac
ccaggcggtcctggccagcctggattcccaggcctcaagggagagactggacctccagga
ttttcaggtacccctggtattcccggaagaagtggtcaaaaaggagacaccggcttccca
ggtgtgccaggattcccagggatgaagggtcatcctgggacccccggtggtatcggatta
acaggagatcccggtattcctggccctgaaggtccccgaggacctcctggtccagtctcc
gcccctataacgttgaagggagagcgaggattcccggggcccccaggccagcctgggagt
cgcgggcccccaggacccccaggccagtcaggcctgccaggaccgataggacaatctgga
gatcccggacgagaaggtctccctggcttcgatggtccttcaggacgtaaaggagacacc
ggtccatctggacagccaggtcagcgaggtttcaatggccctcctggtcccgatggatta
cagggtccccccggcccctctgggtccgcctccgtcgcccacggcttcctgatcacccgc
cacagccagagcgaggacgtgccacagtgcccgaccggcaccagctctatctacgacggc
tactccctgctgtacgtgcagggcaacgagcgggcgcatggacaggacctgggtacggca
ggaagctgtctgcgtcgcttcagcaccatgcccttcatgttctgcaacatcaacaacgtg
tgtaacttcgcctccaggaacgattactcctactggctctccaccccccagcccatgccg
atgagcatggcacctgtaaccggggagagcatccaaccgttcatcagcaggtgttcggtg
tgtgaagcccccgccatggtgatcgctgtgcacagccagaccatccagatcccctcctgc
cctcagggctggtcttcactctggatcggatactccttcatgatgcacaccagtgcgggc
gcggagggctccgggcaggccctggcatcgccaggctcctgtttggaggagttccgctcc
tcccctttcattgagtgccacggccgcggcacctgcaactactacgctaactcctacagc
ttctggctggccactgtcgagttgtcagaaatgttcagtaaacctcagtcagagactctg
aaagtaggaaacctgggttcccgagtaagccgctgtcacgtgtgcatgaagagaacgtaa
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