Acipenser ruthenus (sterlet): 117412625
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Entry
117412625 CDS
T07327
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
arut04121
]
117412625
Enzymes [BR:
arut01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117412625
Ubiquitin system [BR:
arut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117412625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Sina_ZnF
zf-TRAF
Tricorn_PDZ
Prok-RING_4
LemA
zf-rbx1
U-box
DUF3435
zf-RING_6
TRAF2_zf
Motif
Other DBs
NCBI-GeneID:
117412625
NCBI-ProteinID:
XP_033877030
LinkDB
All DBs
Position
21:complement(6392827..6489152)
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AA seq
1058 aa
AA seq
DB search
MGFELDRFNGDVDPDFKCNLCNQVLEDPLATPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKVVKLQHLAEHTEMCDFSPAKCRNKGCNEVL
NLKDMDAHMRETCDYRPVGICEKGCGLVLIYKEQTLDNHCCFKALKAHNSALQGKMVGLD
KEFKKQSLKSSKREKSLLAQLSSVQNELQVTALKYQKKFTEYSARIDSLTKSLSPPCKGG
ETKTFKAALHRDSGSLGFNIVGGRPDNQDGSLNEGIFVSKIVENGPADKEGGLQIHDRIM
EVNGKDLSKATHEQAVEAFRTAKEPIVVQVLRRAPRPKMLNPAHESQLLDTGTQTDITFE
HIMALAKRTTPTPPVAVLEQYLLPEEHSPGHEYYDPNDFLEGMHQEMEREELEYEEVDLY
RLNSQDKLGLTLCYRTDDEDDTGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNREE
AVSLLTSEDNKNVSLLVARPEIQLDEGWMDDDRNDFLDDLHIDMLEEQHHQAMQFTASML
QQKKHDEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENMGDDHTTSSNTLGSR
KKLTYSHDTLGSGDMQFSNESFISADYTDADFLGIPADECERFRELLELKCQVKSANQYS
LYYHTSAMDMNKSDQESVDKELEMLNEELRSIELECLNIVRAHKMQQLKEQYRESWMLHN
SGFHNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEMSPDNSLRRTA
DDINSQGNEGVVANSTGPNGTAPKASLSQAGGQESSSVKSRSYSSKDSDSSKQSEGKDRK
TTDASKTSKAGNLSYQHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRD
PSSPSQLEPKMEWKVKIRSDGTRYITKRPVRDKLLKERAIRIREERSGMTTDDDAVSEMK
MGRYWSKEERKQHIVRAKEQRQRREFMKQSRQDCLKEQGSGEEKKEVNIIELSHKKMNKK
RNKKVFDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagctggatcgttttaatggggatgtggaccctgatttcaaatgcaactta
tgcaatcaagttttggaggatccgcttgcaactccgtgtggtcacgtcttctgcgctggc
tgtgtcttaccatgggttgtccagcaaagcagctgccccgtaaagtgccaaaggatttct
actaaagaactgaaccacgttctccctctgaaaaacctgatactgaagctggacatcaag
tgtgacaaccacgctaggggctgcgagaaagtggtgaagttgcagcatctagcagagcac
acagagatgtgcgacttttcgccagccaaatgcaggaataagggatgcaacgaagtcctc
aatttaaaagacatggatgcccatatgagagaaacgtgtgattatagacctgttgggatt
tgtgagaaaggatgtggtttggtgctaatctacaaagagcagacattagataatcactgt
tgttttaaagctttgaaggctcataatagcgccttgcagggtaaaatggtaggtttggat
aaagagtttaagaaacagtctctgaaatcaagcaaacgcgagaaatctcttctggctcag
ctctcatctgttcagaatgagcttcaagtgacagctctgaaataccaaaagaaattcaca
gagtacagcgcaaggatcgactctctgactaaaagcctgtctcctccgtgcaagggtgga
gagactaaaaccttcaaagctgcccttcatcgtgactctggatctctgggatttaatatt
gttggtggcagaccggacaaccaagatggttctttgaatgaaggaatctttgtgtccaaa
atagtggagaatgggccagctgacaaggaaggaggactgcaaatccatgacaggattatg
gaggtcaatggtaaagatttgtccaaggcgacccatgaacaggcagtagaagctttcaga
acagccaaggagccaatcgtggttcaagttctacgaagagctcctagacccaaaatgctc
aaccctgcccatgagtctcagctgctggatacaggcacacagactgacataacctttgaa
cacatcatggctcttgcaaagcgcaccacccccaccccacctgtggcagtacttgagcaa
tacctgttgccagaagaacattcaccaggacatgaatattatgacccaaatgatttcttg
gaaggcatgcaccaggaaatggagagagaagagttggaatatgaggaagtggacttgtac
agacttaacagccaagacaagcttgggctcacactgtgctatagaacagatgatgaagat
gacacagggatctatgtgagcgagattgatccaaatagcattgctgcaaaagatggccga
atcagagaaggagatcgaattatccagattaatggaatagagattcagaacagagaggaa
gcggtgtcacttctgaccagcgaagacaacaagaatgtgtctctcctcgtagccaggcct
gagattcagctggacgaaggatggatggatgacgacaggaatgactttcttgatgatctg
cacatagatatgctggaggagcagcaccatcaggcgatgcaatttactgccagcatgctt
cagcagaaaaagcacgatgaggatggaggaactacagacacggctacaattttatccaac
cagcacgagaaagacagcggagtggggcgtaccgacgagagcacacgcaacgatgagagc
tcagagcaggagaacatgggagacgaccacaccacttcatctaacactttaggcagtcgc
aagaagctgacttacagccatgacaccctgggaagtggggatatgcagttcagcaatgag
tccttcatatctgccgattacaccgatgcagactttctgggaattcctgcagacgaatgc
gaaagatttcgagagcttcttgagctgaagtgccaagtgaagagtgcaaaccagtacagc
ctttattatcacaccagtgcaatggacatgaataaaagcgaccaggaaagtgtagacaag
gagttggagatgctgaacgaagagctgagaagcattgagctggaatgcctgaacattgta
cgagcacacaagatgcagcagctgaaagagcagtacagagagtcctggatgcttcacaac
agcggcttccacaactacaacaccagcattgacgctcgcagacacgagctgtctgatatc
acagagctgccggagaaatcagataaggacagctcgagcgcttacaatactggggagagc
tgcaggagcactcctcttacactggagatgtcccctgacaactctctccgcagaactgct
gatgatatcaacagccagggcaatgaaggggtggtggccaacagcacagggcccaacgga
acagcgccaaaggcttctctgtcccaagctggaggccaagagtcgagctctgttaaatcc
cgctcctactcctctaaggattctgactccagcaagcagtcagagggaaaggataggaaa
actacagatgccagcaagacttcaaaagctggtaacttatcataccagcactctccctac
aagcatgctcacatcccagctcatgcccagcactatcagagttacatgcagttgatccag
cagaagtcagcagtagagtatgcccagagccagatgagcctggtcagcatgtgcagagac
cccagttctccaagccaattggaacctaagatggagtggaaggtcaagatcaggagtgat
gggacgcggtacatcactaagaggccggtgagggacaagcttctcaaggagcgtgcgata
aggatcagagaggagcgcagcggcatgacgacagacgatgacgcagtcagcgagatgaaa
atgggccgctactggagcaaggaggagcgcaaacagcatatagtacgagcgaaggagcag
aggcagaggcgagagttcatgaagcagagcagacaggattgtctgaaggagcagggcagt
ggagaggagaaaaaggaggtgaatattattgaactgagccacaaaaagatgaacaagaag
aggaacaagaaagtttttgacaattggatgacgatccaagaactgttaactcacggcact
aaatccccagatggaacaagagtatacaattcccttttatctgtaaccactgtataa
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integrated database retrieval system
