Acipenser ruthenus (sterlet): 117428334
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Entry
117428334 CDS
T07327
Symbol
ddx54
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
arut03009
]
117428334 (ddx54)
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117428334 (ddx54)
Ribosome biogenesis [BR:
arut03009
]
Eukaryotic type
Pre-60S particles
Helicases
117428334 (ddx54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
MobA_MobL
DUF1421
DNA_pol3_chi
Tnp_DNA_bind
Motif
Other DBs
NCBI-GeneID:
117428334
NCBI-ProteinID:
XP_034781356
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All DBs
Position
12:11588261..11607098
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AA seq
856 aa
AA seq
DB search
MAQRKKRFTKKRRHPKRDLDVDSDGGEFELAAEVSDEDDSRKAGRTVPGFPTADCLSDVE
PDTRELVRAQNKKKKKSGGFQSMGLGYPVYKGVMKKGYKVPTPIQRRTIPLILDGKDVVA
MARTGSGKTAAFLIPMFERLKAPSAQTGARALILSPTRELALQTMKFTKELGKFCGFKTA
LILGGDRMDDQFAALHENPDIIIGTPGRLMHVVVEMNLKLHSVEYVVFDEADRLFEMGFA
EQLQGVIQRLPENRQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNDQLKLAFFHL
RVDDKPALLLHLLRNVIKPQEQTVVFVATRHHVEYLKELLMLEGMDCAYIYSALDQTARK
INIGKFVHRKAMVMIVTDVAARGIDIPMLDNVINYNFPSKAKLFLHRVGRVARAGRSGTA
YSLVAPDEIAFVFDLHLFLGRPLQLAGPRHSQPDEDGVCGRVPQSILDDEEAMLVTAHEN
SLDLQNMRRISDNAYMQYLKSRPNPSPESVKRVKETDFSSLAVHPLLGSVLENVELERLK
VVDSIKQYKSRARFSRFNFTNKTTAGEVMRAKRSRDVRLVDKFQKSRKDKAAESLLGQPA
ASLPRAESDEESIQNVFSEVLGGKRKKPQSETDAPNKRAKEAGRDEEFYIPYRPKDFDSE
RGLSMQGEGSTFEQQASGAVLDLMGDEGDKMNQHKHMMKWDRKKKRFVRETGKGDKKKTV
RIESGQLVSKSFKKNFYEEWKKKYKVEDGVSDNESGGEGGGSRARTAGGGRGGRGGRRGG
RGAPTPPRRAPVQKSRPELKSHDQILKQRKKKQKQQFLQSGGLQKLRGKNQSRLHEMKRS
GFGRGAVKKGKLRKRL
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaaggaagaagaggtttactaaaaagagacggcatccgaaacgggacctcgat
gtggattcggacggtggggagttcgagttggcggctgaggtcagcgatgaagacgattcc
agaaaggctggcaggacggtccctggcttccccacagcagactgcctgtcggacgtggag
ccggacaccagggagctcgttcgggcacagaacaagaagaagaagaagtcaggaggcttc
cagtccatggggttgggttatccggtttacaaaggggtgatgaagaagggatataaagtc
ccaacaccaattcagaggaggaccatcccgctgatcctagatggtaaggacgtggtggcg
atggcccgcacaggaagtgggaagacagctgcattcctcatccccatgttcgagcgactg
aaagctcccagcgcccaaacaggggcccgtgctctcatcctgtcacccacccgcgagctg
gcactgcagaccatgaagttcaccaaggagcttggcaagttttgtggcttcaagactgca
ctgattcttggaggagacagaatggatgaccagtttgctgccttgcacgagaaccctgat
ataatcattggcacgccgggtcgtctgatgcacgtggtcgttgagatgaacctgaagctg
cacagtgtggagtatgtggtgtttgatgaagctgacaggctgtttgagatgggcttcgca
gagcagctccagggcgttatccagcgactgccagagaaccgtcagaccgtgctgttctcc
gccactctgcccaagctgctggttgagttcgcccgcgcaggtttaacagagccagtttta
attcgactggatgtggacaccaaactgaacgaccagctgaagcttgcgtttttccatctg
cgggtggatgataagccggctctgctgctgcacttgctgaggaacgtgataaagccgcag
gagcagacagtggtgttcgtagctaccaggcaccatgtggagtacctgaaggagttgttg
atgttggaggggatggactgcgcgtacatctacagcgctctggaccagacggccaggaaa
atcaacattgggaagtttgtgcacaggaaggcgatggtgatgatcgtgacggacgtggca
gctcgcgggatagatatccccatgctggacaacgtcatcaactacaacttcccctccaag
gccaagctcttcctgcacagagtcggtcgtgtggcaagagcagggaggagtggtacagct
tacagcctggtggctccagatgagatcgccttcgtgtttgacctgcacctcttcctagga
cgccccctgcagcttgcagggcccaggcacagccagccagatgaggacggcgtgtgtggg
cgagttccgcagagtatcctggacgacgaggaggctatgctggtaacggctcatgagaac
tcgctggacctgcagaacatgcgccgcatctctgacaacgcctacatgcagtacctcaag
tcccggcccaacccctcgcctgagtcagtcaagagagtcaaggagactgacttctccagc
ctcgcagtccaccccctcctcggttctgtgctagaaaatgtggagttggagagactgaag
gtggttgacagcatcaagcaatataaatccagagcacgattttcgagatttaattttacc
aataagaccacagcgggtgaggtgatgcgagcaaagaggagtcgagacgtgcggctggtc
gacaagttccagaaatcccgcaaggacaaggcagcggagagcctgctgggccagcctgcg
gccagcctgccacgggcagagtcagacgaggagagcatccagaatgtgttttcagaagtg
cttggtggcaagaggaagaagccacagagtgaaacggacgctcccaacaagagagccaag
gaggcagggcgcgatgaagagttttacatcccataccgacccaaggacttcgactcggag
agagggctcagtatgcaaggagaaggcagcacattcgagcagcaggcatcgggggcagtc
ctggacctcatgggggacgaaggggacaagatgaaccagcacaagcacatgatgaaatgg
gaccgcaagaagaagcgctttgtgagggagacggggaagggggacaagaagaagaccgtg
aggatagagagcgggcagcttgtcagcaaatccttcaagaaaaacttctacgaggagtgg
aagaagaaatacaaggtggaggacggagtgtctgacaacgaatcaggaggagagggaggt
ggcagccgggccaggacagcgggaggaggaagaggaggtagaggagggaggaggggtggc
agaggagcccccacccccccgagacgggccccggtgcagaagtcccgtccagagctgaag
agccacgatcagattctgaagcagcgcaagaagaagcagaagcagcagttcctgcagagc
gggggcctccagaagctccggggcaagaaccagtcgcgcctgcacgagatgaagaggtcc
ggcttcgggaggggtgccgtcaagaagggcaagctgcgcaagaggctgtga
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