Acipenser ruthenus (sterlet): 117968247
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Entry
117968247 CDS
T07327
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 3-like
KO
K11642
chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117968247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
arut03036
]
117968247
Chromosome and associated proteins [BR:
arut03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117968247
Chromatin remodeling factors
NuRD complex
117968247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
HDA2-3
ResIII
DEAD
AAA_22
HTH_23
PHD_2
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
117968247
NCBI-ProteinID:
XP_034771743
LinkDB
All DBs
Position
Unknown
AA seq
2020 aa
AA seq
DB search
MSSPLRDSDEGEETAVQSEAADVEDEEEEEGEEDERERTREENRSDIYPSAAAAETAAAA
AAGEDDGPVENSEGEAGKKKKRGPKKKKEKKENKPVKIRKRKKPEASEQESGSEREGGEK
SDSGASDKKRRKKHKEKKEKKTKKKKKKEDEENEDSAGTKVEQKSSGQLLRDWGLEDVEH
VFTDEDYHTLTNYKAFSQFTRPLIAKKNPKIPMSKMMTILGAKWREFSTNNPFKGCPAAV
AAAAAAAAASVAEQVSAATASPEQPPPPRKAKTKEGKGGCRNCCFLSFYYLHSDEADLEE
SDLDNSSAHSSSVKSDASGRAKKGKRGRPARKKKKSTSPLSVSVSFSLCDTCPRAYHLVC
LLDPELEKADGYLREVELCPHCEKEGIQWEAKDYDDEDYEEECEEEEEEEGEEEDEEEED
DHLEYCGVCKDGGELLCCDSCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPIKGRVQKIL
HWKWVDPPPPVPVPLPPDASPDCPPPTPLVGRSEREFFVKFAGQSYWHCSWVTELQLEIY
HSVMFRNFQRKNDMDEPPSLDCCSGDDEGRSEKLRSRDMEERYYRYGIKPEWMTIHRIIN
HSVDKKGGLHYLLKWRDLTYDQCTWEEEDMTIPEFESHQSAYWRHRELIIKEDPAKPKKL
KKFKKEEMDDTPPSSPINDPAVQYETQPQFVTVTGGTLHPYQLEGLNWLRFSWTQGTDTI
LADEMGLGKTIQTIVFLHSLYREGHTKGPFLVSAPLSTIINWEREFEMWAPNLYVVTYTG
DKHSRAIIRENEFSFEGNAMKGGRKAFKMRREAQIKFHVLLTSYELVTIDQAALGSINWA
CLVVDEAHRLKNNQSKFFRILNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLD
GFLEEFADISKEDRIKKLHDLLGPHMLRRLKADVFKNMPTKTELIVRVELSPMQKKYYKF
ILTRNFEALNSKGGGNQVSLLNVMMDLKKCCNHPYLFPAAAMESLKLPSGAYEGNTLVKA
SGKLTLLQKMMKKLKEQGHRVLIFSQMTRMLDLLEDFLDFDGYKYERIDGGVTGALRQDA
IDRFNAPGAPQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAKK
VMIYRFVTRGSVEERITQVAKHKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFK
HENEGEEEDSSVIHYDNAAVERLLDRSQDATDDTDMQNMNEYLSSFKVAQYVVREEDKME
EIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQEWH
HDVSDNQSEYSVGSEEEDEDFDERPEGRRQSRRQLRNDKDKPLPPLLARVGGNIEVLGFN
TRQRKAFLNAVMRWGMPSQDAFSCHWLVRDLRVKTEKEFKAYVSLFMRHLCEPVADGSET
FADGVPREGLCRQPVLTRIGVLSLLKKKVQEFEHINGKWSLPELKPESSGDSKKSSRASS
PAIRTVATTPEPSGNSTPCTSQPATPAPVDRGEKSVKDGEQEETEGKEEKTEKESKSAES
GRTSEQQPVLVPEGSSQAVTPSETPESQAAESGEEGKDPPQSEDKKLEEPGDQDTATAPP
TVPEETQDSVKTEDIKMELKQAEIRDTKGPTETPATEVKKEEVKIEKEAGRATAVPAGKE
EAGGRGSGRREERSERPRFMFNIADGGFTELHTIWQNEERAAISSGKINEIWHRRHDYWL
LAGIVVHGYARWQDLQSDSRFSIINEPFRSESSKGNFLEMKNKFLARRFKLLEQALVIEE
QLRRAAYLNMRQESSHPAMALSARFTEAECLAESHQHLSKESLAGNKPANAVLHRVLNQL
EELLSDMKADVSRLPASLSRLPPIAARLHMSERSILSRLASKGSEAQSSTPIPPGPYATP
PNFGPAFSPAPSGTVTTGGANYSQMAPGSFISEASASQKTKEHDILQRQRVVDLWKDGKS
EGSIGLELRMPKSTVHSIIVKYRLSNTVENLPRNGRPKKP
NT seq
6063 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccccgctccgggactctgatgaaggcgaggagacggcggttcaatccgaggca
gcagatgtagaggatgaagaagaagaagaaggagaagaagacgaaagagagagaacgaga
gaggaaaacagaagcgacatttacccgtcggcggcggcagcagaaactgcagcagcagca
gcagcaggtgaagatgacgggccggtggaaaactccgaaggcgaggctggaaaaaagaaa
aaacgaggacccaagaaaaagaaagaaaaaaaagagaacaaaccagtgaagataaggaag
cgcaagaaaccagaggcaagcgagcaggaatcggggtccgagagggagggaggagagaaa
tccgacagcggagccagcgacaagaagaggaggaagaaacacaaggagaagaaagagaag
aaaaccaagaagaagaagaaaaaggaggacgaagaaaacgaggacagcgcgggcactaag
gttgaacagaagtcttcaggacagctgctgagagactggggcctggaggacgtggagcat
gtgttcactgatgaagactatcacaccctgaccaactacaaagccttcagccagttcacc
aggcccctgattgccaagaagaaccccaagatccccatgtcgaagatgatgaccatcctg
ggcgcgaagtggcgcgagttcagcaccaacaacccgttcaagggctgcccggccgccgtg
gccgctgccgctgctgcagccgccgcctccgtcgccgagcaggtctccgcggcaaccgcg
tcgcccgagcaaccgccccccccgcgcaaggccaagaccaaagaaggcaaaggtgggtgc
agaaactgttgttttctgtcgttttattacctacatagcgacgaggcggatttggaagag
tcagacttggataactcgagcgctcacagctcctccgtgaaatcggacgcttcgggacga
gccaagaaaggaaagcgaggcaggccggcccggaagaagaagaaaagtacgtctcctctc
tctgtctctgtgtctttctctctgtgcgacacctgtcctcgagcctaccacctggtgtgc
ctgctggaccccgagctggagaaggctgacggctacctgagggaagtggagctgtgcccg
cactgcgagaaggagggaatccagtgggaggcgaaggattatgacgacgaagactacgag
gaggagtgtgaggaggaggaggaggaggaaggcgaggaggaggacgaggaggaagaggac
gaccacttggagtactgcggggtgtgcaaagacggtggggagctgctctgctgtgactcc
tgcccctcctcctaccacctccactgcctcaacccgcccctgccggagatacccaatggg
gagtggctctgcccgcgctgcacctgccccccaatcaaggggcgagtccagaagatcctg
cactggaaatgggtcgacccccctccccccgtccctgtgcccctcccccccgacgccagc
ccggactgccccccgcccacccccctggtggggcgctcggagagagagttctttgtgaag
ttcgcggggcagtcttactggcactgctcctgggtgactgaactgcagctggagatctac
cactcggtcatgttccgcaacttccagcgcaagaacgacatggacgagccgccctccctg
gactgctgctcgggggacgacgaggggaggagtgagaagctccggagcagggacatggag
gagcgctactaccgctacgggatcaaaccagagtggatgaccattcacaggatcatcaat
cacagcgtggataagaagggaggtctccactacctgctgaagtggagggacctcacctat
gatcagtgcacctgggaggaagaggacatgaccatccccgaattcgagagccaccagtca
gcctactggagacaccgagagctcataataaaggaagacccggcaaaaccaaagaaactg
aagaaattcaagaaagaggaaatggacgacaccccccccagctctcctatcaacgacccc
gcggtgcagtacgagacccagccccagttcgtgacagtgacggggggcacactgcacccc
taccagctggaggggctgaactggctgcgcttttcctggacccagggcaccgacaccatc
ctggcagacgagatggggctgggcaagaccatccagaccatcgtcttcctgcactcgctc
tacagggagggtcacacgaagggcccgttcctagtcagcgctccgctgtccaccatcatc
aactgggagcgtgagttcgagatgtgggccccgaacctctacgttgtgacctacaccgga
gataagcacagccgcgccatcatccgcgagaacgagttctccttcgagggaaacgccatg
aaggggggcaggaaggccttcaagatgaggagggaggcgcagatcaagttccacgtgctc
ctcacctcttatgagctggtcacgattgaccaggctgctctgggctccattaactgggcc
tgcttggtggtggatgaagcacacaggctgaaaaacaaccagtccaagtttttcaggatc
ctgaacggatacaagatcgatcacaagcttctgctcaccggcaccccactgcagaacaac
ctggaggaactgttccatctgctgaacttcctgaccccagagagattcaataacctggac
ggattcctggaggagttcgccgacatctcgaaggaggaccggatcaagaagctgcacgac
ctgctggggccccacatgctgaggaggctgaaggcagacgtcttcaagaacatgccaacc
aagacagagctgatcgtgcgggtggagctgagccccatgcagaaaaaatactacaagttc
atactgaccaggaacttcgaggctctcaactctaaagggggagggaaccaggtgtccctg
ctgaatgtgatgatggacctgaagaagtgctgcaaccatccctacctcttccctgcggct
gccatggagtccttgaagctgcccagcggggcgtatgagggcaacacgctagtcaaggcg
tcagggaagctgaccctgctgcagaagatgatgaagaagctcaaagagcaaggccacaga
gtgctcatcttctcacagatgacgagaatgctggatcttctggaggatttcctggacttc
gacgggtacaagtatgagaggatcgacgggggggtgacaggggctctgcgacaggacgcc
atcgaccgcttcaacgcgcccggggctccccagttctgcttcctgctgtcgaccagggcg
ggcggattagggatcaacctagcgacagctgacacagtcatcattttcgactcggattgg
aacccacacaacgacatccaggcgttcagccgggcacaccgcatcggccaggccaaaaag
gtgatgatctaccgtttcgtgacgcgcggctcggtggaggagcgcatcacgcaggtggcc
aagcacaagatgatgctgacccacctggtggtgcggcccggcctgggctccaagaccggc
tccatgtccaagcaggagctcgacgacatcctcaagttcggcacggaggagctgttcaaa
cacgagaacgagggtgaggaggaggacagcagtgtgatccactacgataacgccgctgta
gagaggctcctggacaggagccaggacgccaccgacgacacagacatgcagaacatgaac
gagtacctgagctccttcaaggtggcgcagtacgtggtgagagaggaggacaagatggag
gagattgagcgcgagatcatcaagcaagaggagaacgtggaccccgactactgggagaag
ctgctgaggcatcactacgagcagcagcaagaagacctggccaggaacctgggcaagggc
aagagagtgcgcaagcaggtcaactacaacgatgcagcacaggaggaccaagagtggcat
catgatgtttcagataaccagtcggagtactccgtggggtctgaagaggaggatgaagat
ttcgatgagcggcctgaaggtcgcaggcagtctcgacgacaactaagaaacgacaaagac
aagcccttaccccccctgctggccagagtcgggggcaacatcgaggtgctggggttcaac
actcggcagcgcaaggctttcctgaacgcagtgatgcgctgggggatgccatcccaggac
gccttctcctgccactggctggtccgagacctgcgggtgaagaccgagaaggagttcaag
gcgtacgtgtctctcttcatgaggcacctctgtgagccggtagcagatggatcagagacc
ttcgcagacggggtccccagagaggggctgtgcaggcagccagtgctcacccgcatcggg
gtcctgagcctgctcaagaagaaggtccaggagttcgagcacatcaacgggaagtggagc
ctgccggagctgaagccggagagcagcggcgactcaaagaaatcctcccgggcctcgtcc
cctgccatccggacggtcgccacgaccccggagcccagcggaaacagcaccccctgcacc
tcccagccagctacccccgcccctgtcgacagaggagagaagagcgtgaaggatggagag
caggaggaaacggagggcaaagaggagaaaacggagaaggaatcaaagagtgcggagagc
ggccgcacctcagagcagcagcctgtactggttcctgagggcagctcccaggcagtcacc
cccagtgagacacctgaaagtcaggcagcggagtcgggagaggagggcaaagacccacca
cagagtgaggataagaaactagaggaaccgggagaccaggacacagcaacagcgccacct
acagtcccagaggagactcaagattctgtgaagacagaagatataaagatggaattgaag
caggctgagatccgggataccaagggccccacagagacccccgccacagaggttaagaaa
gaggaagttaagattgagaaggaggctggaagggcgaccgcagtgcctgctgggaaggag
gaggctggcggccgggggagcgggaggagagaggagaggagcgagcggccgcggttcatg
ttcaacatcgcagacggagggttcacagagctgcacacgatatggcagaatgaagagcgt
gccgccatctcctctggcaaaatcaatgaaatctggcaccgtcgccatgactactggctg
ctagcgggcatcgtggttcacggctacgctcgctggcaggacctccagagtgacagccgg
ttcagcatcattaacgagccgttcaggagtgagagcagcaagggcaacttcctggagatg
aagaacaagttcctagctcgcaggttcaagctgctggagcaggccctggtgattgaggag
cagctccgacgcgctgcctacctcaacatgaggcaggagtccagccaccccgccatggct
ctgagcgcccgcttcacagaggcggagtgcctggctgagagccaccagcacctgtccaag
gagtccctggcagggaacaagcccgccaacgcagtcctgcacagggtgttgaaccagctg
gaggagctgctgagtgacatgaaggccgatgtgagccgcctccccgcctcgctgtcccgc
ctcccccccatcgcagcgcggctgcacatgtcagagaggagcatcctgagcagactggcc
agcaagggcagtgaagcccagagcagcacgcccatcccccctggaccatatgccacgccc
cccaactttgggccagcctttagccccgccccttcggggactgtgacgacgggaggagcc
aattacagccagatggcgccagggtccttcatatcagaagccagcgccagccagaagacc
aaggagcacgacatcctccagcggcagcgcgtggtggatctgtggaaggacggcaagtcg
gagggctccatcgggctggagctgaggatgcccaagtccacagtgcacagcatcattgtc
aagtaccggctcagcaacaccgtagagaacctgccccgtaatggcagaccaaagaagccc
tga
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integrated database retrieval system
