Aeromonas rivipollensis: C7N77_12420
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Entry
C7N77_12420 CDS
T05453
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
arv
Aeromonas rivipollensis
Pathway
arv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7N77_12420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arv03019
]
C7N77_12420
03009 Ribosome biogenesis [BR:
arv03009
]
C7N77_12420
Enzymes [BR:
arv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7N77_12420
Messenger RNA biogenesis [BR:
arv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7N77_12420
Ribosome biogenesis [BR:
arv03009
]
Prokaryotic type
rRNA helicases
C7N77_12420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AVP93909
LinkDB
All DBs
Position
2672200..2674113
Genome browser
AA seq
637 aa
AA seq
DB search
MLAACLNLEESMSDTEQLPLFSELGLAAPVLKALQDVGYERPSPIQAAAIPHLMAGHDLL
GQAQTGTGKTAAFALPLLSRLEAGNRNTQILVLAPTRELALQVAEACQRYAKHMPDFHVL
PIYGGSSYETQTRALRRGAQVVVGTPGRVMDLIRRKNLDLSGLKALVLDEADEMLRMGFI
DDVDWIMEQCPATRQVALFSATMPDQIRRVAQKHLKQPKEIKIITKTSTAPTIRQRYWQV
TGLHKLDAMTRLLEVEPYEAVLVFVRTKNAAEELAGKLAARGHACEALHGDIPQKLRERT
VDKLRQGQLDILIATDVVARGLDVERITHVVNYDIPYDTESYVHRIGRTGRAGRKGEAIL
FVAPRERRMLRAIEHATRQAIEPMKMPSTEDINQHRMTKFKERIRETMMGEELEIYVNLV
NELIEEDSADPLELAAALAKLVQGDQPLLLDDSITEPASDRAGREFERRDFGDRAPRDFG
DRGDRPARRMPSLEPRPLKDNPDVEMERYRVDVGAHHGVKPGQIVGAIANEANIESRFIG
NIDIADDFSTVDLPKGMTADVLEVIKKARVCQRPLQITRYTEVPAGSNTAPRPPRSDRPF
NKDRRPSGDRPFNKSGERREGGFNKDRKFGGNKRRDS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
gtgttagccgcctgccttaatctggaagaatctatgtctgataccgaacaactgcccctt
tttagtgagcttggactggccgcgcctgtattgaaagcgctgcaagacgtgggctatgag
cgcccgtcaccgatccaggccgcagcaattccccacctgatggcgggacacgatctgctg
gggcaggcgcaaaccggtacagggaagaccgctgcttttgccttgcctctgttgtctcgt
ctggaagctggtaaccgtaacactcagattttggtgctggcaccgacccgtgagctggcg
ctgcaagttgccgaggcgtgccaacgttacgccaagcacatgcctgacttccatgtcctg
cccatctacggtggttcctcttacgaaacccagacccgcgccctgcgccgtggtgcccag
gtggtcgtcggtaccccgggtcgtgtgatggatctgatccgtcgcaagaacctggacctc
tccggcctgaaagccctggtactggacgaagccgatgaaatgctgcgtatgggcttcatc
gacgacgtggactggatcatggaacagtgcccggccacccgtcaggttgccctgttctct
gccaccatgccggaccagatccgtcgtgttgcccagaagcacctgaagcagccgaaagag
atcaagatcatcaccaagacgtccactgcaccgaccatccgccagcgctactggcaggta
accggtctgcacaagctggacgccatgacccgtctgctggaagttgagccgtacgaagcc
gtactggtcttcgtgcgcaccaagaatgccgccgaagagctggccggcaagctggccgcc
cgtggtcacgcctgtgaagccctgcacggtgacatcccgcagaagctgcgtgagcgtacc
gtcgacaagctgcgtcaaggccagctggacatcctgatcgccaccgacgtcgtcgcccgt
ggtctggacgtcgagcgcatcactcacgtggtgaactacgacattccttacgacaccgaa
tcctacgttcaccgtatcggtcgtaccggtcgtgccggtcgtaaaggtgaagccatcctg
ttcgtggctccccgcgagcgccgcatgctgcgcgccatcgagcacgccactcgtcaggcc
atcgagccgatgaagatgccgagcaccgaggacatcaaccagcaccgcatgaccaagttc
aaggagcgcatccgggaaaccatgatgggcgaagagcttgagatctacgtgaacctggtg
aacgagctgatcgaagaagattctgccgatccgctggagctggctgccgccctggccaag
ctggtgcagggtgaccaaccgctgctgctggatgactccatcactgaaccggcaagcgac
cgtgctggccgtgagttcgagcgccgtgacttcggtgatcgtgctccccgtgatttcggt
gaccgtggcgatcgtcctgcccgtcgcatgccgtccctggagccgcgcccgctcaaagac
aatcctgacgtggagatggagcgttaccgcgtagacgtgggtgcccatcacggcgtcaag
ccgggccagatcgtgggcgccatcgccaacgaagcgaacatcgagagccgtttcatcggc
aacatcgacatcgccgatgacttctccaccgtcgatctgcccaagggcatgacagccgac
gtgctggaagtgatcaagaaggcccgtgtctgccagcgtccgctgcagatcactcgctac
accgaggtgccggctggcagcaacaccgccccccgtccgccccgcagcgatcgtcccttc
aacaaggaccgccgtcccagcggtgaccgtccgttcaacaagagcggggagcgccgtgaa
ggtggcttcaacaaggatcgcaagttcggtggcaacaagcgccgcgacagctaa
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