Arthrobacter sp. ZXY-2: ARZXY2_1816
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Entry
ARZXY2_1816 CDS
T05201
Symbol
rfbD
Name
(GenBank) putative dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K23987
dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:
5.1.3.13
1.1.1.133
]
Organism
arx
Arthrobacter sp. ZXY-2
Pathway
arx00521
Streptomycin biosynthesis
arx00523
Polyketide sugar unit biosynthesis
arx00541
O-Antigen nucleotide sugar biosynthesis
arx01100
Metabolic pathways
arx01110
Biosynthesis of secondary metabolites
arx01250
Biosynthesis of nucleotide sugars
Module
arx_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
arx00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
ARZXY2_1816 (rfbD)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
ARZXY2_1816 (rfbD)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
ARZXY2_1816 (rfbD)
Enzymes [BR:
arx01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.133 dTDP-4-dehydrorhamnose reductase
ARZXY2_1816 (rfbD)
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
ARZXY2_1816 (rfbD)
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Motif
Pfam:
RmlD_sub_bind
dTDP_sugar_isom
Epimerase
GDP_Man_Dehyd
Motif
Other DBs
NCBI-ProteinID:
AOY71361
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Position
1881367..1882812
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AA seq
481 aa
AA seq
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MTSRTTPIPGLLVFGLPVHGDQRGWFKENWNRSSMGALGLPDFGPVQNNISFNARRGTTR
GIHAEPWDKFISLASGKIFGAWVDLREGPSFGAVFHCEMTPGDAVFVPRGVGNAFQTLED
NTAYTYLVNDHWSAGAQDEYTFLNLADPHAAVPWPLPLNQATLSEQDKNHPRLESVVPVK
PRRILVPGANGQLGRALREAFADADYVDFATRDEFDVTDEDAYRSIPWRKYSTIINATAF
TGVDVAETAPGRTAAWRVNAGAVSRLARTAVEHSLTLVHVSSDYVFDGSAEVHTEDEPPS
PLGVYGQSKAAGDTAVAAVPKHYIVRSSWVVGDGPNFVRTMAQLAERGVRPSVVDDQRGR
LTFAADIAAGIKHLLASGAPYGTYNLSGGGEPKSWAGIAREVYRLCGSDPDMVVPVSTEQ
YSKPGTAPRPRNSTLALSKIEASGFVPAPVESRLAGYLMDHATDRTTSFKDSGRIGQRSE
T
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcccggaccacaccgatcccgggcctgctggtcttcgggctgcccgtgcacggc
gatcagcgggggtggttcaaggagaactggaaccggagcagcatgggcgccctcggcctc
ccggatttcggtcccgtccagaacaacatttctttcaacgcccgccgcggaaccacccgg
ggaatccatgccgagccgtgggacaagttcatctccctggcatccggaaagatattcggg
gcatgggtggacctgcgggaggggccttccttcggggcagtgttccactgcgagatgacg
cccggggacgcggtgttcgtgcccaggggcgtcggaaatgcgttccagaccctcgaggac
aacactgcgtacacctaccttgtcaacgaccattggagcgccggcgcgcaggatgaatac
accttcctgaatctggcggacccccacgccgctgtaccttggcccctgccattgaaccaa
gccaccctgtccgagcaggacaaaaatcatccccgccttgaatccgtggtcccggtgaaa
ccccgccgaatcctggttccaggggccaacgggcagttgggcagggcactccgggaggct
ttcgccgacgccgattacgtcgacttcgccacccgggatgaattcgacgtaactgatgaa
gacgcctaccggagcattccctggcgcaagtactccaccatcatcaacgccacggccttc
actggcgtcgacgtggcggagacggcgccgggacggaccgctgcgtggagggtcaacgca
ggcgccgtgtcccgcctggcgagaaccgccgtcgaacattccctgactttggtccacgtc
tccagcgactacgtttttgacggctcggcggaggtccataccgaggatgagccaccgagc
ccgctgggcgtgtacgggcaaagcaaggctgccggtgacacagccgtagcagccgttcca
aagcactacattgtgcgaagcagctgggtggttggcgacgggccgaatttcgtgcggacg
atggcacaactggctgaacggggcgtgcggccctccgtggtggacgaccagcggggacgg
ctgacattcgcggccgatattgctgccggcatcaagcatctgctggcgtcgggcgccccc
tacggcacgtacaacctcagcggtggaggggaaccgaaatcgtgggccgggattgcccgt
gaggtgtaccggctgtgcggttcggacccggacatggtggtgcctgtgagcactgagcag
tattccaaacccggtacggcaccccgcccgcgcaacagcaccttggctctgtcaaagatc
gaggcttccggatttgttccggcgcccgtggaatcacggcttgccggctatctcatggat
cacgcaacggatcgcacaacttccttcaaggactccggccgaattggacaaagaagcgaa
acatga
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