Arthrobacter sp. ZXY-2: ARZXY2_2666
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Entry
ARZXY2_2666 CDS
T05201
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arx
Arthrobacter sp. ZXY-2
Pathway
arx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ARZXY2_2666 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arx03400
]
ARZXY2_2666 (mfd)
Enzymes [BR:
arx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ARZXY2_2666 (mfd)
DNA repair and recombination proteins [BR:
arx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ARZXY2_2666 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AOY72193
LinkDB
All DBs
Position
complement(2765511..2769134)
Genome browser
AA seq
1207 aa
AA seq
DB search
MSLNGLRRALAEDKTFARVRTEAGRPFESRSTDYQISAPTGMRSVLLAEMADALATGAAG
DPVVLAVTATGREAEDLTAALASYLPADSVATFPSWETLPHERLSPRSDTVGRRLSVLRR
LAHPESSTAAPLRVVVAPVRAVVQPIVAGLGDLVPVTLKVGQERSFTDVVRALSDAAYAR
VDMVTHRGEFAVRGGILDVFPPTEDHPIRVEFFGDEIDQMRWFAVADQRSLSAPGIHHPT
ELHAPPCREILITPAVMSRAAKLKADMPAAADMLEKIAGGIAVEGMESLAPVLVDAMVPL
VDQLPAGSMTVVIEPEKVRTRAHDLAATNEEFLEAAWSTASDGGAAPLDLLSRASTDLHA
ASFRSLTDTRTAALEHGVSWWSITSLASDEDLVLDIDVLNLHAREPRGYQGDVAEMLEFI
GSRVRDQWRIVVVTDGPGPAQRLAELFHDAEIPCSRVDSLDKEPQPGIIEVTCAAVGRGF
VLDGLKLGLLTEADLLGRASASSTKDMRRMPSKRRNAVDPLQLHAGDFVVHEQHGIGKFV
ELIQRKVAGTSASDSGLREYLVLEYAPSKRGAPGDRLFVPTDQLDQVTRYVGGDAPALSK
MGGADWASTKSKARKAVKEIAGELIRLYSARMASRGHAFAPDTPWQRELEEAFPYVETPD
QLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQ
HYETFTERFSGFPLRVKPLSRFQTSKEAKETAEGVKNGSVDVVIGTHRLLSKDFEFKDLG
LVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERH
PVLTYVGPYTDKQTSAAIRRELMREGQVFFVHNRVSSIERVAAQIRELVPEARVEVAHGQ
MSESRLEKIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQLRGRVG
RGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKDLEIRGAGNLLGGEQS
GHIQGVGFDLYIRLVGEAVAEYRGDAEEKAAEMKIELPVNAHLPHDYVPGERLRLEAYRK
LAAAVTNEAIEEVLAELVDRYGEPPLPVQNLIAVARFRVGAREAGLSDVALQGNFIRFSP
AQLPESKVMRLNRMYPGSQVKPALDAVLIPKPKTARIGGRDLQDAEILEWANNVIEAIFA
DVPVKAG
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaacggcctgcgccgcgcactggcggaagacaagacttttgcgcgcgttcga
acagaggctgggcggcctttcgagtcccgaagcaccgactatcaaatcagcgcgcccacc
ggcatgcggtccgtcctgctcgccgaaatggccgacgccctggccaccggtgccgccggt
gatccggtggtactggccgtgacagccaccgggcgcgaggccgaggacctcaccgctgcg
ctcgcctcctacctgcccgccgactccgttgccactttccccagctgggaaaccctcccg
cacgaacgcctctcgccccgctctgacacggtgggacgccgcctgtcggtcctgcgcagg
ctcgcccacccggaaagttcgacggcggccccgctccgggtagtggtggcacccgttcgc
gccgtggtccagccgattgtggccggcttgggcgacctcgtccccgtcaccttgaaggta
gggcaggagcgctccttcaccgacgtggtgagggcgctgtccgacgcggcctacgcccgg
gtggacatggtgacccatcgcggtgaatttgcggtgcgcggcggcatcctggacgtcttc
ccgcccacggaagaccaccccatccgcgtggagttcttcggcgacgaaatcgaccagatg
cgctggttcgccgtggccgaccaacggtcgttgtccgccccgggcatccaccaccccacg
gagctccacgccccgccgtgccgggaaatcctcatcacccctgcggtcatgtcccgcgca
gccaaactgaaggcggacatgccggccgcggccgacatgctggagaagatcgccggcggc
attgccgtggagggcatggaatccctggcgcccgtgctggtggacgccatggttcctttg
gtggaccagcttcccgcaggctccatgacggtagtcattgagccggagaaggtccgtacc
cgggcccacgacctcgcggccacgaacgaggaattcctggaggcggcctggtcgacggcg
tccgacggcggcgccgcgcctttggacttgttgtcccgggcgtccacggacctgcatgct
gcaagcttccgatccctcaccgacacccgtaccgcagcactggaacacggcgtttcctgg
tggtccatcacatcccttgcctccgacgaggacctggtcctggacatcgacgtcctcaac
ctgcacgcccgcgaaccgcgcggataccaaggtgacgtggctgaaatgctggagttcatc
ggctcccgcgtccgcgaccagtggcggatcgtggtggtcacggacggcccgggtccggcc
cagcgcctggccgaactgttccacgacgccgagattccgtgcagccgcgtggactccctg
gacaaggaaccgcagcccggaatcattgaggtgacctgtgccgccgtcggacgcggtttt
gtgctggacgggctcaaactgggcctcctcacggaagccgatttgctgggacgggcgtcg
gcaagttccacgaaggacatgcggcgcatgccgtccaagcggcgcaatgccgtggacccg
ctgcaactgcatgccggcgacttcgtggtccatgaacagcacggaatcggcaagttcgtt
gagttgatccagcgcaaggttgccggtacgtcggcctccgattcgggccttcgggagtat
ttggtcctggagtatgccccctccaagcgcggggctccgggggaccggttgttcgttccc
accgaccagctggaccaggtgacccgctatgtaggcggcgacgctccggccctgagcaag
atgggcggcgccgactgggccagcaccaagtccaaggcgcgcaaggccgtgaaggagatc
gccggggagctgatccgcctttactcggcgcgcatggccagccgggggcacgccttcgcc
ccggacaccccgtggcagcgcgagcttgaagaagccttcccgtatgtggaaacaccggac
cagctgaccaccatcaatgaggtcaaagcggacatggaacgcgagattcccatggaccgc
ctggtgtccggcgatgttggctacggaaagaccgaaatcgcagtccgggccgcgttcaag
gccgtccaggacgggaagcaggtggccgtcctggtgccgaccacgctcctggcacaacag
cattatgaaactttcacggaacgcttcagcgggttccccctgcgcgttaagcccctgtcc
cgtttccagacctcgaaggaagccaaggaaaccgccgagggcgtcaagaacggttccgtg
gacgtcgtaatcggaacccaccggcttctgtccaaggatttcgagttcaaggacctcggc
ctggtaatcgtcgacgaagagcagcggtttggcgtggagcacaaggaagcgctgaagaag
atgcgcaccaatgtggacgtcctggccatgagcgccacgccgattccgcgtaccctggag
atgtccctgacaggcatccgggagacctccaccttggccaccccgccggaagagcgccac
ccggtgctcacgtatgttggcccgtacacggacaagcagacctcggctgctatccgccgc
gagctcatgcgtgaaggacaggtgttcttcgtgcacaaccgcgtctcttccattgagcgt
gttgcggcacagatccgcgaactggttcctgaggcccgcgtggaagtggcccacgggcaa
atgtccgagagccgcctggaaaagatcattgtggacttctgggagaaacgcttcgacgtg
ctggtgtgtaccaccatcattgagaccggcctggacatttccaacgccaataccctgatt
gtggacggcgcggacaagtatggcctgtcccagctccaccagctccgtggccgggtgggc
cgtggccgcgaacgcgcctacgcctacttcctgtacccctcggaaaagccgctgggtgag
gtggcgttggagcgcctcaaggccgtggctgcccacaacgagctgggcgccggcatgcag
ttggccatgaaggacctcgaaatccgcggtgccggcaacctcctgggcggcgagcagtcc
ggccacatccagggcgtgggcttcgacctctacatccgcctggtgggcgaagccgtggcc
gagtaccgcggagacgcggaggagaaggccgcggagatgaagatcgagcttcccgtcaat
gcgcacttgccgcatgactacgtgcccggagagcggcttcgcctggaggcctaccgcaag
ttggcggccgccgtcaccaacgaggccatcgaggaagtcctggccgaactcgtggaccgg
tacggcgagcccccgctgcccgtgcaaaacctgatcgccgtggcgcgcttccgtgtgggg
gcccgcgaagccggcctgtccgacgtcgcgctccagggaaacttcatccgattctcgccg
gcgcaactgcccgaatccaaggtcatgcgcctgaaccgcatgtaccccggttcccaggtg
aagcctgcgctggatgccgtgttgatccccaaacccaagaccgcccggatcggcggacgc
gacctgcaggacgccgaaatcctggagtgggccaacaacgtcatcgaggcgatcttcgcc
gatgtacccgtgaaagccggctga
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