Arthrobacter sp. ATCC 21022: AUT26_05965
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Entry
AUT26_05965 CDS
T04477
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
arz
Arthrobacter sp. ATCC 21022
Pathway
arz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
arz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AUT26_05965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arz03400
]
AUT26_05965
Enzymes [BR:
arz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUT26_05965
DNA repair and recombination proteins [BR:
arz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AUT26_05965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AMB39801
LinkDB
All DBs
Position
1302545..1306168
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AA seq
1207 aa
AA seq
DB search
MSLNGLRRALAEDKTFARVRTEAGRPFESRSTDYQISAPTGMRSVLLAEMADALATGAAG
DPVVLAVTATGREAEDLTAALASYLPADSVATFPSWETLPHERLSPRSDTVGRRLSVLRR
LAHPESSTAAPLRVVVAPVRAVVQPIVAGLGDLVPVTLKVGQERSFTDVVRALSDAAYAR
VDMVTHRGEFAVRGGILDVFPPTEDHPIRVEFFGDEIDQMRWFAVADQRSLSAPGIHHPT
ELHAPPCREILITPAVMSRAAKLKADMPAAADMLEKIAGGIAVEGMESLAPVLVDAMVPL
VDQLPAGSMTVVIEPEKVRTRAHDLAATNEEFLEAAWSTASDGGAAPLDLLSRASTDLHA
ASFRSLTDTRTAALEHGVSWWSITSLASDEDLVLDIDVLNLHAREPRGYQGDVAEMLEFI
GSRVRDQWRIVVVTDGPGPAQRLAELFHDAEIPCSRVDSLDKEPQPGIIEVTCAAVGRGF
VLDGLKLGLLTEADLLGRASASSTKDMRRMPSKRRNAVDPLQLHAGDFVVHEQHGIGKFV
ELIQRKVAGTSASDSGLREYLVLEYAPSKRGAPGDRLFVPTDQLDQVTRYVGGDAPALSK
MGGADWASTKSKARKAVKEIAGELIRLYSARMASRGHAFAPDTPWQRELEEAFPYVETPD
QLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQ
HYETFTERFSGFPLRVKPLSRFQTSKEAKETAEGVKNGSVDVVIGTHRLLSKDFEFKDLG
LVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATSPEERH
PVLTYVGPYTDKQTSAAIRRELMREGQVFFVHNRVSSIERVAAQIRELVPEARVEVAHGQ
MSESRLEKIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQLRGRVG
RGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQLAMKDLEIRGAGNLLGGEQS
GHIQGVGFDLYIRLVGEAVAEYRGDAEEKAAEMKIELPVNAHLPHDYVPGERLRLEAYRK
LAAAVTNEAIEEVLAELVDRYGEPPLPVQNLIAVARFRVGAREAGLSDVALQGNFIRFSP
AQLPESKVMRLNRMYPGSQVKPALDAVLIPKPKTARIGGRDLQDAEILEWANNVIEAIFA
DVPVKAG
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaacggcctgcgccgcgcactggcggaagacaagacttttgcgcgcgttcga
acagaggctgggcggcctttcgagtcccgaagcaccgactatcaaatcagcgcgcccacc
ggcatgcggtccgtcctgctcgccgaaatggccgacgccctggccaccggtgccgccggt
gatccggtggtactggccgtgacagccaccgggcgcgaggccgaggacctcaccgctgcg
ctcgcctcctacctgcccgccgactccgttgccaccttccccagctgggaaaccctcccg
cacgaacgcctctcgccccgctctgacacggtgggacgccgcctgtcggtcctgcgcagg
ctcgcccacccggaaagttcgacggcggccccgctccgggtagtggtggcacccgttcgc
gccgtggtccagccgattgtggccggcttgggcgacctcgtccccgtcaccttgaaggta
gggcaggagcgctccttcaccgacgtggtgagggcgctgtccgacgcggcctacgcccgg
gtggacatggtgacccatcgcggtgaatttgcggtgcgtggcggcatcctggacgtcttc
ccgcccacggaagaccaccccatccgcgtggagttcttcggcgacgaaatcgaccagatg
cgctggttcgccgtggccgaccaacggtcgttgtccgccccgggcatccaccaccccacg
gaactccacgccccgccgtgccgcgaaatcctcatcacccccgcggtcatgtcccgcgcg
gccaaactgaaggcggacatgccggccgcggccgacatgctggagaagatcgccggcggc
attgccgtggagggcatggaatccctggcgcccgtgctggtggacgccatggttcctttg
gtggaccagctgcccgcaggctccatgacggtagtcattgagccggagaaggtccgtacc
cgggcccacgacctcgcggccaccaacgaggaattcctggaggctgcctggtcgacggcg
tccgacggcggcgccgcgcctttggacttgttgtcccgggcgtccacggacctgcatgct
gcaagcttccgatccctcaccgacacccgtaccgcagcactggaacacggcgtttcctgg
tggtccatcacatcccttgcctccgacgaggacctggtcctggacatcgacgtcctcaac
ctgcacgcccgcgaaccgcgcggataccaaggtgacgtggctgaaatgctggagttcatc
ggctcccgcgtccgcgaccagtggcggatcgtggtggtcacggacggcccgggtccggcc
cagcgcctggccgaactgttccacgacgccgagattccgtgcagccgcgtggactccctg
gacaaggaaccgcagcccggaatcattgaggtgacctgtgccgccgtcggacgcggtttt
gtgctggacgggctcaaactgggcctcctcacggaagccgatttgctgggacgggcgtcg
gcaagttccacgaaggacatgcggcgcatgccgtccaagcggcgcaatgccgtggacccg
ctgcaactgcatgccggcgacttcgtggtccatgagcagcacggaatcggcaagttcgtt
gagttgatccagcgcaaggttgccggtacgtcggcctccgattcgggccttcgggagtat
ttggtcctggagtatgccccctccaagcgcggggctccgggggaccggttgttcgttccc
accgaccagctggaccaggtgacccgctatgtaggcggcgacgctccggccctgagcaag
atgggcggcgccgactgggccagcaccaagtccaaggcgcgcaaggccgtgaaggagatc
gccggggagctgatccgcctttactcggcgcgcatggccagccgggggcacgccttcgcc
ccggacaccccgtggcagcgcgagcttgaagaagccttcccgtatgtggaaacaccggac
cagctgaccaccatcaatgaggtcaaagcggacatggaacgcgagattcccatggaccgc
ctggtgtccggcgatgttggctacggaaagaccgaaatcgcagtccgggccgcgttcaag
gccgtccaggacgggaagcaggtggccgtcctggtgccgaccacgctcctggcacaacag
cattatgaaactttcacggaacgcttcagcgggttccccctgcgcgttaagcccctgtcc
cgcttccagacctcgaaggaagccaaggaaaccgccgagggcgtcaagaacggttccgtg
gacgtcgtaatcggaacccaccggcttctgtccaaggatttcgagttcaaggacctcggc
ctggtaatcgtcgacgaagagcagcggtttggcgtggagcacaaggaagcgctgaagaag
atgcgcaccaatgtggacgtcctggccatgagcgccacgccgattccgcgtaccctggag
atgtccctgacaggcatccgggagacctccaccttggccacctcgccggaagagcgccac
ccggtgctcacgtatgttggcccgtacacggacaagcagacctcggctgctatccgccgc
gagctcatgcgtgaaggacaggtgttcttcgtgcacaaccgcgtctcttccattgagcgt
gttgcggcacagatccgcgaactggttcctgaggcccgcgtggaagtggcccacgggcaa
atgtccgagagccgcctggaaaagatcattgtggacttctgggagaaacgcttcgacgtg
ctggtgtgtaccaccatcattgagaccggcctggacatttccaacgccaataccctgatt
gtggacggcgcggacaagtatggcctgtcccagctccaccagctccgtggccgggtgggc
cgtggccgcgaacgcgcctacgcctacttcctgtacccctcggaaaagccgctgggtgag
gtggcgttggagcgcctcaaggccgtggctgcccacaacgagctgggcgccggcatgcag
ttggccatgaaggacctcgaaatccgcggtgccggcaacctcctgggcggcgagcagtcc
ggccacatccagggcgtgggcttcgacctctacatccgcctggtgggcgaagccgtggcc
gagtaccgcggagacgcggaggagaaggccgcggagatgaagatcgagcttcccgtcaat
gcgcacttgccgcatgactacgtgcccggagagcggcttcgcctggaggcctaccgcaag
ttggcggccgccgtcaccaacgaggccatcgaggaagtcctggccgaactcgtggaccgg
tacggcgagcccccgctgcccgtgcaaaacctgatcgccgtggcgcgcttccgtgtgggg
gcccgcgaagccggcctgtccgacgtcgcgctccagggaaacttcatccgattctcgccg
gcgcaactgcccgaatccaaggtcatgcgcctgaaccgcatgtaccccggttcccaggtg
aagcctgcgctggatgccgtgttgatccccaaacccaagaccgcccggatcggcggacgc
gacctgcaggacgccgaaatcctggagtgggccaacaacgtcatcgaggcgatcttcgcc
gatgtacccgtgaaagccggctga
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