Athalassotoga saccharophila: ATHSA_0149
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Entry
ATHSA_0149 CDS
T06407
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asac
Athalassotoga saccharophila
Pathway
asac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATHSA_0149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asac03400
]
ATHSA_0149
Enzymes [BR:
asac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATHSA_0149
DNA repair and recombination proteins [BR:
asac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATHSA_0149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_30
SecA_DEAD
AAA_16
AAA_22
AAA_25
UB2H
Peripla_BP_5
Motif
Other DBs
NCBI-ProteinID:
BBJ27281
LinkDB
All DBs
Position
139580..142600
Genome browser
AA seq
1006 aa
AA seq
DB search
MESLSQNLSIKGDRINFYSSGTLGLLSVVMKIQKINMGALVVLPNHREVRSFHSNLSEAG
IESLILSDLNLLPLESAEPMKDDLATRVEALYGIISGKIVIADIMAVLKKTSPAEFIKNG
LRLSTGGSIPFDITKMLFELGYTRTLTVRSVGEFAIRGNIIDIFSPVEGPIRIDTFDRDI
ESIRIFDPQTQISVKNIESVTIYPATEFRHDEESFEIAKKRLEGYPQLIENFQSLYGMVG
LFWKDSQCALDLVPPDEYLVIYEVEECKKYFEDYERELKDIYGDLRLVKSFAYSDIERID
GNKKIIYVSLNPLKIPLDNVVEFKAGMAPYSVEHVSSQNAYDYIQEIEINEPVVHEDHGI
GIYRGTEIIEDTDGMHEYLKIEYKNGAILYTPIEKFTKISKYVGSNFVLSDINGKEWKSL
KEKARKDIEDQVRELIELYAMREESKGFSFMPQTELEEAFSKSFGYIETPDQMKAIQEVF
EDMESPRPMDRLVCGDSGFGKTEVAMRAAFRAVANGKQVVLLAPTMILAKQHFENFKKRM
EPFGIKVDLIYSQTAESEKKKTIESIANGKSDIVIGTHALLSKKISFKDIGLLIIDEEQR
FGARQKEHLKSLKLNVDVLTLSATPIPRTLYMALSGIKAISVISTPPIGRVPPRIYITRW
NEKIVTMAILKEINRGGQVFYIHNRIEDMEKIVEKLKKMLPSVTIATVHGKMTKREFEET
VNGFYAGKIDMLVSTSVVENGVDVPNANTLIVDDVERYGMAQLYQIKGRVGRSSKKSYIY
FMYTKEPGETVMKRLKAIEEFNEFGSSLNLALKDLEIRGSGEVLGLKQHGHIDAIGLQMY
KEILEETIKKMRGEKVENRNCDPDISLPSSILPQNYIEDTIERMKIYRRLASAKSVEEVD
QIEDEVVDRFGKFPDHVQNLFIHSKIKAILCDLKITKVNSNGGDVEIIFGDKESLMNFSK
FAKTYSLNLQKNGMILTGVIKNGKIEKLLNLLIEYKKHLEQKEGVA
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
ttggaatctctttctcaaaacctctccataaagggagataggataaatttttactcttcc
ggtacattaggccttctctctgtagtcatgaaaatccaaaaaatcaatatgggcgctctc
gtcgttttgccaaatcatagagaggtaagatcatttcactcgaacctttcagaggcagga
atagagagtttgatactttcggatttaaatcttttgcctctcgagagtgctgagcctatg
aaagacgatcttgcgacgagagtggaagcactttacggaatcatttctggcaagatagta
atagcagatatcatggcagttttaaagaaaacatctccggccgaattcataaagaatggt
cttaggctttcgacgggaggctctataccttttgatatcacaaaaatgctttttgaattg
ggatacacgcgcactcttactgtaagaagtgtcggagaattcgcaataaggggaaatata
atagacatcttctcgcccgttgaaggccccataagaatcgatacctttgacagagatata
gaatcgataaggatattcgatccacaaacgcaaataagcgtgaaaaatatcgaatcggta
acgatatatccggcaacggaatttaggcacgatgaagagagtttcgagatcgccaaaaaa
agacttgaaggatatccccagttgattgaaaattttcaaagtctttacggcatggtaggc
cttttctggaaggactcccaatgtgctcttgatcttgtccctccagatgaatatctcgtc
atctatgaagtggaagaatgtaaaaaatattttgaggattacgagagggaattgaaggat
atatacggcgatctcagacttgtaaagtcatttgcatattcggatatagaaagaatcgat
ggaaataaaaagatcatctacgtctctttaaatcctctcaaaataccgctcgataacgtt
gtcgagttcaaggcaggaatggctccttacagtgtcgaacatgtatcttctcaaaatgct
tacgattacattcaggaaatagaaatcaatgaacctgttgtgcatgaagaccacggaata
ggaatataccgcggcacagagatcattgaagatactgatggaatgcatgaatacctcaaa
atagagtacaaaaatggtgccattctttacacgccaatagaaaaattcacaaagataagc
aaatacgtaggatctaactttgtactctcagacataaatggaaaagaatggaaaagtttg
aaagaaaaggcccgaaaggacatagaggatcaggtaagagaattgatagaactttacgca
atgcgagaagaatcgaagggattttcattcatgccccagaccgaactcgaagaggccttt
tcaaagagttttggctatatcgaaactccagaccagatgaaggccattcaggaagttttc
gaagacatggaatcgccaaggcccatggataggctcgtttgtggcgattccggctttgga
aagacagaggttgcaatgagggccgcctttagggccgtcgccaacggaaaacaggttgtt
ctccttgcaccgactatgatcttggcaaagcaacacttcgagaatttcaagaaaaggatg
gagccttttggaataaaggtcgatttgatctattcacagacggcggaatcggaaaaaaag
aaaacgatagagtcaatcgcgaatggaaaatcagatatcgtaataggcactcatgcactc
ctttcaaaaaagatatctttcaaagacataggtcttctcataatagacgaggaacaaaga
tttggagcaaggcagaaagaacatcttaaatccttgaaattgaacgttgacgtgcttacc
ctttcggcaacacctatcccgcgcacgctctacatggcactttcaggcataaaggccatc
tcggtcataagcacgccacccatcggaagggtaccgccacgcatttacataacgagatgg
aatgagaagatagtcacaatggccattttaaaagagataaatcgtggcggacaggttttc
tacattcacaacagaatcgaagatatggaaaaaatagtcgaaaaactcaaaaaaatgctt
ccttccgtaacgatagcgactgtccacggaaagatgaccaagcgtgaattcgaagagacc
gttaatggcttctacgctggcaagatagacatgttagtttccacaagtgtcgttgaaaat
ggtgtggacgttccaaatgcaaacactctcatagtggatgatgtggaaagatacggtatg
gcacaactttaccagataaaaggcagggttggaagatcctcaaaaaaatcttacatatat
ttcatgtacacaaaagaaccgggagagacggtcatgaaaaggctaaaagcgatagaggag
ttcaacgaatttggaagttctctaaaccttgctttaaaagatctcgaaataagagggagc
ggagaggtgctcgggttaaaacaacatggtcatatagacgcaataggacttcagatgtat
aaagagatactcgaagaaactataaagaagatgagaggagaaaaggtcgaaaacagaaat
tgcgatccggacatatcgcttccatcttcgatcttgccccagaactacatcgaggacacg
atagagaggatgaagatatacagaagacttgcttcggcaaaaagcgttgaggaggtagat
caaatagaagatgaggttgtagataggtttggaaaatttccagatcatgtccaaaatctc
tttattcattcaaaaatcaaggcaatcctgtgcgatctcaaaataacaaaggtgaactcg
aatggcggagatgtggaaataatctttggtgataaagagagtttgatgaatttttctaaa
tttgccaagacctattctttaaatcttcaaaaaaatggtatgatattaaccggtgtcata
aaaaatggaaagatcgaaaaacttttgaatttactcattgaatataaaaaacaccttgaa
cagaaggaaggagttgcttga
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