Agrobacterium salinitolerans: CFBP5507_25805
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Entry
CFBP5507_25805 CDS
T08921
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
asal
Agrobacterium salinitolerans
Pathway
asal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFBP5507_25805 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asal03400
]
CFBP5507_25805 (ligD)
Enzymes [BR:
asal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFBP5507_25805 (ligD)
DNA repair and recombination proteins [BR:
asal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFBP5507_25805 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UYZ10933
UniProt:
A0A4Z1R668
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All DBs
Position
pAtCFBP5507a:298869..301523
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AA seq
884 aa
AA seq
DB search
MASDKLSTYKQKRDFEKTQEPSGAAKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHHDDFSVEENGAAVLEDN
ATSVASGRSMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERAADTKTKRKPAP
KKPAKSAIPEFIPPQLCETLERPPSADGWIHEIKFDGYRIQARVENGEVTLKTRKGLDWT
SKYPAIATSASNLPDAIIDGEICALDENGAPDFAALQAALSEGKTDQLVYFAFDLLFEGG
EDLRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADA
PYQSGRTDTWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFRGDHFVYVGRVGTGYGAKT
VETILQSLKELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAGWTADGLVRQAAFKGL
REDKPAHEVEAEKPASPAKTDTPTPAVTKPSRPARGKNAKAEVMGVMISSPDKALWPDAN
DGEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELV
KVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPRQPEVPGRLVFDLDPGPDVPFSTV
VEAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVAKGKKLSWPEAKGFAHDVCQQMAR
ENPDLYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWSQVKTDLD
PKRFTIRTVPALLKKTSAWQDYCDGQRSLEQAIKRLAKSMKQAA
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacaagctatcgacctacaagcagaaacgcgattttgaaaagacgcaggag
ccgagcggcgcagcgaagctgaaggcgtccaaccgcaggcgcttcgtcattcagaaacat
gacgcaacccggctgcattacgacttgcggctcgaactcgatggcgtcttcaagtcctgg
gctgtcaccaagggaccgtcgcttgatccgcacgacaagcgcctggctgtcgaggtcgaa
gaccatccgttggactatggcgacttcgagggcaccattccgaaaggccagtatggcggc
ggaactgtcatgctctgggatcgtggctactgggagccggaaggcaacaagacgccggag
caggccctcgccaaaggggatttcaagttcacactggagggagagcggctgcatggcagc
ttcgttctggtgcggatgcgcaacgatcgtgacggcggcaagcgcacaaattggctgctg
atcaagcatcatgacgacttctcagtcgaggagaatggtgctgcggtccttgaggacaac
gcgacgtccgtcgcctccggccgaagcatggaggcgattgccgccggcaaaggcaggaag
ccgaagccgttcatggtccagagcggcgacgtccaggcagatgccgtttgggacagcaat
cacgggctggcggcggaggaacgtgccgcggacacgaagacaaagcgcaagccggcgccg
aaaaagccggcaaagtccgcgataccggagttcataccgccccagctttgcgagacgctc
gaacgaccgccttcggccgatggctggatccacgagatcaagttcgacggctatcgcatt
caggcgcgcgtcgaaaacggcgaggtgacgctgaagacccgcaaagggctggactggacg
agcaaatatccggcgattgcgacatcggcctcaaacttgcctgatgccatcatcgacggg
gagatctgcgccctcgacgaaaacggcgcgccggacttcgcagcacttcaggcggcgctg
tcggaaggcaagaccgaccaactggtctatttcgccttcgacctgttgttcgagggcggt
gaagacctgcggcaattgccgctcaccgagcggaaggaacgcctgcagacactgcttgat
gatgccggtgaggatcctcgcttgcgttttgtcgaacatttcgaaaccggtggcgatgcg
gtcctcaaatcggcatgcaagctgtcgctggaaggcattgtctcgaaacaggctgacgct
ccctaccaatcgggacgcaccgacacatgggcgaaatccaagtgccgcgctggccatgag
gttgtgatcggcgcctatgccaagaccaacggcaagttccgttccctgttggtcggtgtc
ttccggggtgatcacttcgtctatgtcggccgggtcgggaccggctacggtgccaaaacg
gtcgagacgatcttgcagagcctcaaggaactggaaacatcaaagtcgccctttaccgga
atcggcgcgccgaaaaaggatcccaacgtggtctgggtcaaacccgaactggttgccgag
atccagttcgccggctggactgcggatggtcttgtccgccaggcggcgttcaagggattg
cgcgaagacaagcctgcacacgaagtcgaggcagaaaagccggcatcgccggcaaagacc
gacaccccgacgccggccgtgacaaagccgtcaaggccggcacgcggcaagaacgccaag
gccgaagtgatgggcgtaatgatctcgagcccggacaaagcgctctggcccgatgccaat
gacggagagccggtgacgaaggaagatcttgcccgctatcacgaagccgttggtccatgg
ctgatcgaccatatcaagggacggccatgctcgatcatccgtgcgccggatggcatcggc
ggcgagcagttttttcagcgacatgcaatgccgggaacctcgaacctgctcgaactggtc
aaggtgtttggagacaagaagccgtatctgcagattgatcgggtggagggccttgccgcc
attgcccagatcggcggcgtcgagctgcatccgtggaattgcgaaccgcgccagccggag
gtgccaggccgtcttgtcttcgacctcgatcccggtccggacgtgcccttttcgaccgtg
gtcgaagccgcccgggaaatgcgcgaccggctggaggaactcggcctcgtcagcttctgc
aagaccaccggcggcaagggtctgcatgtcgtcacgccgctcgcggtagcgaagggcaag
aagctgtcttggcccgaggcaaagggttttgcacacgatgtctgccaacaaatggcacgc
gagaacccggacctctaccttatcaagatggccaagaaccaacgcaatggccgcatcttc
ctcgactacctgcgcaatgaccggatggcgacggcggttgcacccttgtcaccacgcgca
aggcccggcgccaccgtgtcgatgcctctcacgtggagccaggtgaagaccgatctcgac
ccgaaacgcttcaccatccgcaccgtgccagcgctcctcaaaaagaccagcgcctggcag
gattattgcgatggccagcgttcgttggagcaggccatcaaacgattggcgaagtcgatg
aaacaggctgcctaa
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