Anolis sagrei ordinatus (Brown anole): 132772264
Help
Entry
132772264 CDS
T09595
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
asao
Anolis sagrei ordinatus (Brown anole)
Pathway
asao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132772264 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asao03021
]
132772264 (PCF11)
03019 Messenger RNA biogenesis [BR:
asao03019
]
132772264 (PCF11)
Transcription machinery [BR:
asao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132772264 (PCF11)
Messenger RNA biogenesis [BR:
asao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
132772264 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
132772264
NCBI-ProteinID:
XP_060627179
LinkDB
All DBs
Position
Unknown
AA seq
1710 aa
AA seq
DB search
MSSSSSSSSSSSASEGPSSGGGGEDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAK
DIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLAAFTKNLVATFVNVFEKVDENTR
KSLFKLRSTWDEIFPLKKLYALDVRVNSVDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEE
PPVPSSTVTSSPVSSSAVSSTPIVPEVQKNLTQEQLIRQQLLAKQKQLLELQQKKLELEL
EQTKAQLAVSLSGSSLGPASLRQHAPQPSHMPVKAPLPACLPPEKNRLSPLHDVKTPNRD
PRLNRTSQHASHSKDQSHRKDFVTNPVSQTDPKTSKTLQTEKQTTSKQEKQKQSEKLQKK
EFVQLDAKSKPKSPSPLQSKLPHSKDTRNQECESSRVSEISKRDPRLKKHLMEKPDGKDD
DTKEKRRSVERKDKEEHRSTGSRNKIVNGIVQKQDLSTEELEKQGGKPGRSSNRKRSRSP
RSRSPSSHSPKRRDRRSPKRRLRSLSPSITKMGKPRQSGPKSHAEDFGPDIRDERTSNKR
SLKLELRDSRRPKRIHEDRPQEGTNQHSSKATSEPKENVENWQSSKSSKRWKSGWEENKN
PQINEEHQSGSKPPHQRHRETWPTSKGVTSPRTPKQQHRLSVDANLQIPKELTLANKREL
LKKANERLSSGEITQDDFLVLCHKIHQLFQYQEGKHRCNVWDSPSGEKGVSKKKPLLSES
ELIYHEHKAKLKRTQVQHAFPRLNMVDAEDILDYHLKDTFLSAIDCEQTKNKSGGQLVER
SRRHSPIGSNRPYSENSQHEGRRRHDEPNSLKGIREEQRPTYSSEPYKRVRYEDTEKPFT
ESAGSRFGHDLVTDGKQRFSSLLEERVHFEDSPRHPGTRAGGDGQPTHFDGLVNTNSRME
GPQAQTNIRFEATLNQPGSKFDGPPVQSGGKGSLMFDGPPAPMGGSPLNFEGPTGQIGAG
MGIQFEEPIGQSGGSLRFDGPSGIRFEGQPPGGMRFESHNQPGMRFEGPPGQSSGIRFER
PHDQPSASMRFDGQPSGGMRFEGPHGQLRFEGPHEHPLGPHGPPGGGMRFEGPHGQPIGP
HGQPGPGLRFEGPHMQPVGPLSQPGGNLRFDAPHGQPSGLRFEGPHGQPVGPFGQSGVGP
RFEGPLGQGPHGQPGMGPRFEGPSSIQSGGVRFEGPISQTGPRFDGSQSRFDDQPSHPSL
LQRLDGLHGPRFEMGPAQQTPFRFDGPPGHQVQPRFDTSIPQRFEDPAVRFDIALGHQGQ
RIENMASHPTSRPEALPYGQTGPFNEPSGQPPFNGPSQGMPFQRPEQIFDNAQGPNFNGP
PIPGAQAFPNSLNRAPGPFYDDGNLQGPQYGNFNNMSVGNVQPPQQVPIMSIAAAQPVPY
GQPQPLLPVHAQNPGSFVQNQPGNVPLSYPDNHLGQLDVNDLYSKLLSTGILKVLQPDTA
SPQISEISTQPVPEEEEEEQDQNEDQDVPDLTNFVIEDLKQRYDSVINRLYTGIQCYSCG
MRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQ
FFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGVDESCEICQEQFEQYWDEEEEEWHLKNAI
RVDEKIYHPSCYEDYQKTSSFDSTPSPSKTPVENPLNIMLNIVKQEVQDSCSGPKVKEEP
EEEKPDKCMEESKPLMSAEIKTEPEKVESV
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgagcagcagcagcagctcctcctcgtcggcgtcggaagggcccagctcgggc
gggggcggcgaggacgcctgccgcgactaccagtcgtcgctcgaggacctgaccttcaac
agcaagccgcacatcaacatgctgaccatcctggccgaggagaacgtgcccttcgccaag
gacatcgtctcgctcatcgaggcgcaaaccgccaaggctccttctagtgagaaacttcct
gtcatgtaccttatggattccattgtcaagaatgttggaagagaataccttgctgcattt
actaaaaacttagttgcaacatttgttaatgtgtttgaaaaggtggatgaaaatactagg
aaaagtttatttaaattgcgttccacgtgggatgagattttccctttgaagaaactatat
gcacttgatgtccgggtgaattcagtagaccctgcttggccaattaagccactaccccct
aatgtgaatacttctagcatccatgtgaaccctaagtttttaaacaaatcgcccgaggaa
cctcctgtacctagctctacagtcacttcttctccagtatccagttctgctgtttcctct
actccaattgttccagaagtacaaaagaatttgactcaagaacaattaataagacagcag
cttctggcaaaacaaaagcagttgttagaacttcaacagaaaaaattagaactggaacta
gagcagactaaagcacaactggctgtttctcttagtgggtccagcctgggcccagcttcc
ttgagacaacatgctccacagccgtctcatatgcctgttaaagctccacttccagcttgt
cttccaccagagaaaaaccgcctatctccactccatgatgtcaaaacacccaacagagat
cctcgtcttaatagaacaagtcaacatgcttcccattctaaagatcaaagccataggaaa
gattttgtgacgaatccagtcagccagacagatccaaagacttccaaaactttacagact
gaaaaacaaactacatcgaagcaagaaaagcaaaaacagagtgagaaattgcagaagaaa
gagtttgtccaattggatgcaaaatcaaaaccaaagtcaccatctcccttgcaaagcaag
ctgcctcatagtaaagataccaggaaccaagaatgtgagagtagcagagtatctgaaata
agcaagagagatcccagattaaagaaacatctcatggagaagccagatggtaaagatgat
gatacaaaagaaaagagaagaagtgttgaaagaaaagacaaagaagaacatagatcaact
ggtagtagaaataaaatagttaatggcattgtgcaaaaacaggatctcagtactgaagag
ttggagaaacaaggtggaaagccagggaggtcaagtaataggaaaaggtcccgttctcct
agatcccgatcaccgtcttcccattctcctaaacgaagagatagaaggtctcccaaaaga
aggcttaggagtctctctccttccataacaaagatggggaagcctcggcaatctggacca
aagtctcatgcggaagactttgggccagacatacgggatgaaaggacctccaataaaagg
agccttaaactggaactgagagactcaaggaggccaaagagaattcacgaggaccggcca
caagaaggcacaaaccagcattcttcaaaggcaacatctgaacccaaagaaaacgtggag
aactggcaaagttctaagtcaagcaaaagatggaaatctggttgggaagaaaataaaaac
ccccaaattaatgaagaacatcaaagtggtagtaaacccccacatcagaggcacagggaa
acttggccaactagtaaaggagtcacatcacctcgcacaccaaagcagcaacatcgacta
agtgttgatgccaatttgcagattcccaaagaactgaccttggcaaacaagagagagctt
ttgaagaaggcaaatgaacgtctatcttctggtgaaataacacaagatgacttcctggtt
ctgtgtcataagattcatcaactcttccaatatcaagaaggaaagcacagatgcaatgtg
tgggatagcccatcaggggaaaagggcgtttccaaaaagaagcccttgttgtctgaatcg
gaattaatatatcatgaacataaagctaaactgaaaaggacacaagttcaacatgctttt
ccaagactcaatatggtagatgcagaagacattttagactatcacttaaaggatacattt
ctttctgcaattgactgtgaacaaacaaaaaacaaaagtggtggccagcttgtagaaaga
tcaagacggcattctcctattggaagtaacaggccctactcggagaattcacagcatgaa
ggtcggagaaggcatgatgagccaaactctttaaaaggtattcgtgaggagcaaaggcct
acatacagtagtgaaccttacaagagagtgagatacgaagatacagagaaaccgtttacc
gagagtgcgggatcacgatttggtcacgatttggttactgatggaaagcaaagatttagt
tcattgttggaagagagagttcactttgaagactctcctaggcatcctggcacaagggca
ggtggagatggacaaccaactcactttgatgggctggtgaatacaaattctagaatggaa
ggaccacaagcacagacgaatataaggtttgaagccactctaaaccagccaggatcaaag
tttgatggacctccagtgcagtctggagggaaaggttctctaatgtttgatgggccacca
gcgccaatgggaggcagtcccttgaactttgaagggcctacaggacagattggggcagga
atgggaatacagtttgaggaacccataggacagtcagggggatcacttaggtttgatggt
ccttcaggcataagatttgagggacagccccctggagggatgaggtttgagagtcataac
cagccagggatgaggtttgaaggccctcctggtcaatcatctggaatcaggtttgagaga
ccacatgaccagccttcagctagcatgaggtttgatggccagccatcgggtggaatgaga
tttgaagggccacatggccagctgaggtttgaagggcctcatgaacatcctctgggacct
catggacctccaggtggagggatgagatttgaaggaccgcacggtcagccaatagggcct
catggacaaccagggcctggattacggtttgaaggaccacatatgcagccagtaggtcct
cttagccaaccaggaggcaatttgcggtttgatgcaccacatgggcaaccaagtggtctg
agatttgaggggccacatggacagccagttgggccatttgggcagtcaggggttggacct
agatttgagggtcctcttggtcaggggccacatggacagcctgggatgggtccaagattt
gaagggccttcttctatccaatccggtggagtgagatttgaaggacctattagtcaaaca
ggcccaagatttgatggctctcagtcaagatttgatgatcaaccatcgcatccatcactt
ttgcaaagactggatggattgcatggtccaaggtttgaaatgggccctgctcagcaaacg
ccttttcggtttgatggtccaccaggtcaccaggtacaaccacgatttgatacatcaata
cctcagcgctttgaagatcctgcagtacggtttgatattgctcttggtcatcagggtcaa
agaattgaaaatatggctagccatccaacctcgagaccagaagctttgccttatggacaa
actggccctttcaatgaaccatcaggccagcctccctttaatggaccatcgcaaggaatg
ccatttcagagacctgagcaaatatttgataatgctcagggaccaaatttcaacgggcct
cctattcctggagcacaggcctttcctaattctcttaaccgggcacctgggccattttat
gatgacggcaaccttcaaggacctcaatatggaaacttcaataatatgtcagtgggaaat
gttcagccaccccaacaggttcctattatgtctattgctgctgctcagcctgtaccttac
ggtcaacctcaaccactcttaccagttcacgcacagaatcctggaagctttgtccaaaat
caaccaggaaatgttccactatcttatcctgataatcatcttggacaacttgatgtaaac
gatttgtactcaaagctactatccacaggaattctcaaagttttacagccggatacagct
tcaccacaaatcagtgaaatttctactcagccagttccagaggaggaagaagaagaacaa
gaccaaaatgaggatcaagatgtccctgacctgactaattttgtgatagaggacctaaaa
cagcggtacgatagtgttataaatcgcctctatacgggcattcagtgttattcttgtggc
atgaggtttacaacatctcagacagacgtctatgcagatcacttggattggcattatcgg
cagaaccgcactgaaaaggatgttagcaggaaagttactcacagaagatggtactacagc
ctaacagactggatagagtttgaagaaattgcagatttagaggagcgtgcaaagagtcag
ttctttgaaaaagtacatgaggaagttgtgttaaaaacacaagaagctgctaaagaaaag
gaatttcagagtgtccccgcaggcccagctggagtagatgagagctgtgaaatatgccag
gagcaatttgagcaatattgggatgaggaagaggaagagtggcacctaaaaaatgccatc
cgtgtagatgaaaagatctaccatccctcatgctatgaggattatcaaaagacttcctcc
tttgactcaactccttcacctagcaagacgcccgttgaaaacccactaaatattatgttg
aatattgtcaaacaagaagtacaggactcctgtagcggccccaaagtcaaggaagagcca
gaggaggaaaagcctgacaaatgcatggaggagagcaaacctttaatgtctgccgaaatt
aaaactgaacctgaaaaggttgagtcagtttaa
DBGET
integrated database retrieval system
