Anolis sagrei ordinatus (Brown anole): 132781122
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Entry
132781122 CDS
T09595
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
asao
Anolis sagrei ordinatus (Brown anole)
Pathway
asao03013
Nucleocytoplasmic transport
asao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132781122 (UPF1)
03015 mRNA surveillance pathway
132781122 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asao03019
]
132781122 (UPF1)
Enzymes [BR:
asao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132781122 (UPF1)
5.6.2.5 RNA 5'-3' helicase
132781122 (UPF1)
Messenger RNA biogenesis [BR:
asao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132781122 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
132781122 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
132781122
NCBI-ProteinID:
XP_060641074
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQGQTPPAAAGSGASASSS
SAAQGHGGPPSAAAPGPLDAQVNGPDGILQNGAVDDSVPKTSQLLAELNFEEDEEDTYYT
KDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGP
LGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQD
RCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLR
YEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMR
LMQGDEICLRYKGDLAPLWKGIGHVIKVPDSFEDYGDEIAIELRSSVGAPVEVTHNFQVD
FVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLN
HSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTE
KIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE
KRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVL
GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFP
SNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAAN
VEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGR
EKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYY
KEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQ
GRPSNMYFQTHDQIGMISTGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGNLK
GKASRGGRQKNRFGLPGTGQSNLPNSQASQDVASQPFSQGPLTQGYISMSQPSQMSQPGL
SQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggcccagctcccaaacgctgacgttcctggacacggaggag
gccgagctgctgggtgccgacacgcagggctccgagttcgagttcaccgacttcaccttg
cccagccagggccagacgccgcccgccgccgccgggagcggggcctccgcctcttcctcc
tccgccgctcaaggccacggcggcccgccctctgccgccgccccggggcccctcgacgcc
caggtcaacgggccggatggcatcctccagaacggggctgtggatgacagtgtaccgaag
accagccagctccttgccgagctcaactttgaggaggatgaagaggatacctactacacc
aaggacctccctgtgcatgcctgcagctactgcggcatccatgatccagcctgtgtggtc
tactgtaataccagcaaaaagtggttctgcaatggacgcgggaatacctctggcagccac
atcgtgaaccacctggtgcgagccaagtgcaaagaggtgactctccacaaggacggtcct
ctgggtgagacagtcctggagtgctacaactgtggctgccgcaatgtcttcctgctgggc
ttcatcccggccaaagccgactctgtggtcgtcttgctgtgcaggcaaccttgtgcaagt
cagagcagcctgaaggacatcaactgggacagctctcagtggcagcctctgattcaagac
cgctgcttcctttcctggctggtcaagatcccttcagagcaagagcagctcagggcccgg
cagatcaccgcccagcaaatcaacaagctggaagagctgtggaaggagaacccgtctgcc
accctcgaagacttggagaagcctggcgtcgacgaggagccacagcacgtcctgctccgc
tatgaggacgcctatcagtaccagaacatctttgggccactggtgaaactcgaggcggac
tacgacaagaagctgaaagagtctcagacccaagacaacatcactgtgaggtgggatttg
ggtctgaacaagaagaggattgcctacttcactttgccgaagacagattcagatatgcgt
ctgatgcagggagatgagatctgcctgaggtacaagggggacttggccccactctggaaa
gggattggccacgtgatcaaagttcctgatagtttcgaagattacggcgacgagattgcc
attgagctgcggagcagcgtgggggcccccgtggaggtgacccacaacttccaggtggac
tttgtgtggaagtcaacctcctttgacaggatgcagagcgccctgaagaccttcgcggtg
gatgagacctctgtctctggctacatctaccacaagctcctgggccatgaggtggaggat
gtcatcatcaagtgccagctgcccaagcgcttcactgcccaagggctgccagacctcaac
cactctcaggtgtatgcagtgaagactgtcttgcagcgacccttgagcctcatccagggg
ccccctgggactgggaagactgtgacctcggccactatcgtttatcacctggcgaggcaa
ggaaatgggcctgtgctcgtctgcgctccaagtaacatcgccgtggaccagctgacggag
aagattcaccagacgggactgaaggtggttcgcctttgcgccaagagccgcgaagccatc
gactcacctgtctccttcctggccctgcacaaccagatcaggaatatggatagtatgcct
gagctccaaaagctgcagcagctgaaagatgagactggggagctgtcctctgctgacgag
aagcgctaccgggccctgaaaaggacagccgagcgggaattgctcatgaatgcggacgtc
atttgctgcacctgcgtgggagctggcgacccacggctggccaagatgcagttccgctcc
atcctgattgacgagagcacccaagccacagagcctgagtgcatggtgccggtggtcctg
ggggcaaagcagctgatcctcgtgggcgaccactgccagcttggcccggtggtgatgtgc
aagaaggcagccaaagctggcctgtcgcagtccctttttgagcggctggtggtgctgggc
atccgacccatccgcctccaggtccagtaccgcatgcacccggccctgagcgccttccca
tcgaacatcttctacgagggatccctgcagaatggtgtcacggcagcggaccgtgtgaag
aaaggctttgacttccagtggccccagccagacaagcccatgttcttctatgtgacccaa
gggcaagaggagatcgcaagttccgggacttcgtacctgaacagaacggaggctgcaaat
gtggagaagattaccaccaagttgctgaaggctggggcgaagccggaccagattgggatc
atcacgccgtatgaagggcagcgctcctacctggtgcagtacatgcaattcagcggttcc
ttgcacaccaagctctatcaggaagtggaaattgccagcgtggatgctttccaagggcgt
gagaaggacttcatcattctctcctgcgtcagggccaatgagcaccaaggcatcggtttt
ctgaatgatccccggcgcctcaacgtggctctgacccgagcgagatatggtgtcatcatt
gtggggaaccccaaggccctatccaagcagcccctctggaaccacctgctcaactactac
aaggagcaaaaggtgctggtggaaggccccctgaacaacctacgcgagagcctcatgcag
ttcagcaagccccggaaactggtcaataccatcaacccgggggcccgcttcatgaccacc
gccatgtatgatgctcgtgaggccattatccccggatcggtgtacgaccgcagcagccaa
ggccgcccctccaacatgtacttccaaacccatgaccagattgggatgatcagcaccggg
cccagccatgtcaccgccatgaacatccccatccccttcaacctggtgatgccacccatg
ccgcccccggggtactttgggcaggccaatggtcccgctgccggccgggggaacctgaag
ggcaaggctagccggggcgggcggcagaagaatcgctttgggctcccggggaccggccag
tccaacctgcccaacagccaggccagccaagacgtggcctcgcagcccttctcccagggg
cccttgacccagggctacatttccatgagccagccctcccagatgagccagccaggcctc
tcccagccagagctttcccaggatagctacctgggcgatgagttcaagtcccagatcgat
gtggccctgtcacaggactcgacgtaccaaggggagcgcgcttatcaacacggagtgacc
ggactgtcacagtattaa
DBGET
integrated database retrieval system
