Actinocatenispora sera: Asera_02070
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Entry
Asera_02070 CDS
T07446
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aser
Actinocatenispora sera
Pathway
aser03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Asera_02070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aser03400
]
Asera_02070 (mfd)
Enzymes [BR:
aser01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Asera_02070 (mfd)
DNA repair and recombination proteins [BR:
aser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Asera_02070 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
UB2H
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BCJ26099
UniProt:
A0A810KUR1
LinkDB
All DBs
Position
complement(226011..229661)
Genome browser
AA seq
1216 aa
AA seq
DB search
MKLAGLLTAALADPALARARDTAREGGAAAQRLDLTAPPALRPFVVAAIAADAAAGAGRP
VLAVTATEREADDLAEALRSLLPPDEVVSYPAWETLPHERLSPRSDTVARRLSILRRLAH
PVAGEPAQGPVRVVCSAVRSVLQPQLRGLGDLEPVRLASGDTADLEQVARRLTDLAYSRV
DMVGGRGEFAVRGGILDVFPPTEEHPLRVEFWGDEVDEIRPFAVADQRSFEPTGEKPVVL
APPCRELLLTPEVRARAAALAADHPGLAEMCEKLAEGIPVEGMESLTPALVGGDNLELLV
DGMPTGTVVLACDPERIRSRAHDLVSTSAEFLAASWAAAAAGGAEPIDLGAAAFHSLADV
RGRADELGMPWWSLSPFGTVEAESAPSSIEAELAEIDPELASAVDDVVPDDAVALGAQPA
PLYHGDGAALLGDVRRWAADGYAVALVFEGHGPAQRTVELLHEADQGAMLVEAIAEPPEP
QSILVGCGGLDRGFVDETGKIVVITGNDITGGKGASTKDMRRMPSRRRKNAIDPLELKPG
DYVVHEQHGIAKYLDMVRRTINGAEREYLVLEYAPSKRNQPGDQLFVPTDQLDQLTRYVG
GEHPTLSKMGGADWQKTKSRARKAVKEIAAELIRLYAARQNSPGHAFGPDTPWQRELEDA
FPFRETPDQLEAIDEVKADMRKQYPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLV
PTTLLAQQHYNTFTERMAQFPVNIRTLSRFNTAIETEQTLTGIADGSADIVLGTHRLLSS
QTRFKQLGLVIVDEEQRFGVEHKEYLKQLRTHVDVLTMSATPIPRTLEMAVTGIREMSVI
ATPPEERHPVLTFVGAYADKQVAAAVRRELLRDGQVFYLHNRVESIEKAARRIRELVPEA
RVAVAHGQMGEERLEKIMLDFWNREIDVLVCTTIVESGIDIPNANTLIVERADILGLSQL
HQIRGRVGRGRERAYAYFLYPGEKPLTEQAHERLATIAQHTELGAGMFVAMKDLEIRGAG
NLLGGQQSGHIEGVGFDLYVRMVGEAVQAFKGEAPEEIAEVKVDLPVDAHLPHDYISVER
LRLEMYRKLAEVRDEAALDEVRAELSDRYGEIPTPVENLLQVANFRLLARRYGLTDVSLQ
GRHVRFSPMPLPDSKQLRLKRFYPDATFKSTVDMVSVNRPTTRRVGGEPMRDLPLLNWCA
ELITTILDAPAPAKTG
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgccggcctgctgaccgctgccctcgccgacccggcgctcgctcgcgcccgc
gacaccgcccgcgaaggcggcgcggccgcgcagcggttggacctgaccgcaccgccggcg
ctgcggccgttcgtggtcgccgcgatcgccgccgacgcggcggccggcgccggccgcccg
gtgctcgcggtcaccgccaccgagcgggaggccgacgacctggccgaggcgctgcgctcg
ctgttgccgccggacgaggtcgtgtcctacccggcctgggagacgctgccgcacgagcgg
ctctcgccgcgctcggacacggtggcccggcggctgtccatcctgcgccggctggcgcac
ccggtcgccggcgagccggcgcagggtccggtccgggtggtctgctcggcggtgcgcagc
gtgctgcagccgcagttgcgcgggctcggcgacctggaaccggtgcggctcgcctccggc
gacaccgcggacctggagcaggtcgcgcggcggctgaccgacctggcgtacagccgggtc
gacatggtcggcgggcgcggcgagttcgcggtgcgcggcgggattctcgacgtgttcccg
ccgaccgaggagcacccgctgcgggtcgagttctggggcgacgaggtggacgagatccgc
ccgttcgcggtggccgaccagcgctcgttcgagccgaccggggagaagccggtcgtgctc
gcgccgccgtgccgcgagctgctgctcaccccggaggtacgggcacgagcggcggcgctg
gccgccgaccacccgggcctggcggagatgtgcgagaagctcgccgagggcatcccggtg
gagggcatggagtcgctgaccccggcgctggtcggcggcgacaacctggagctgctggtc
gacggcatgccgaccggtacggtcgtgctcgcctgcgatccggagcggatccgctcgcgg
gcacacgatctggtgtccacctcggcggagttcctcgccgccagctgggccgccgcggcg
gccggtggcgccgagccgatcgacctcggcgcggccgccttccactcccttgccgacgtg
cgcgggcgtgccgacgagctgggcatgccgtggtggagcctcagcccgttcggcaccgtg
gaggcggagtcggcgccctcctcgatcgaggccgaactcgccgagatcgaccccgaactg
gcgtccgccgtggacgacgtggtgccggacgacgcggtcgcgctcggcgcgcagcccgcc
ccgctgtaccacggggacggtgccgcgttgctcggcgacgtgcgccgctgggccgccgac
gggtacgcggtcgcgctggtgttcgagggccacgggccggcgcagcgcacggtcgagctg
ctgcacgaggccgaccagggcgccatgctggtcgaggcgatcgccgagccgccggaaccg
cagtcgatcctggtcggctgcggcgggctggaccgcggcttcgtcgacgagaccggcaag
atcgtggtgatcaccggtaacgacatcaccggcggcaagggcgcgtccaccaaggacatg
cgccggatgccgagccgccggcggaagaacgcgatcgatccgctggagctcaagcccggc
gactacgtggtgcacgagcagcacggcatcgcgaagtacctggacatggtgcgccgcacg
atcaacggcgccgagcgcgaatacctggtgctggagtacgcgccgagcaagcgcaaccag
cccggtgaccagctgttcgtgccgaccgaccagctcgaccagctcacccgctacgtcggc
ggcgagcacccgacgctgtccaagatgggcggcgccgactggcagaagaccaagtcccgg
gcccgcaaggcggtcaaggagatcgccgccgagctgatccggttgtacgcggcgcggcag
aactcgcccggccacgcgttcggcccggacaccccgtggcagcgcgagctggaggacgcg
ttcccgttccgggagacgccggaccagctggaggccatcgacgaggtcaaggccgacatg
cgcaagcagtacccgatggaccggctgatctgcggcgacgtcgggtacggcaagaccgag
atcgccgtgcgggcggcgttcaaggcggtgcaggacggcaagcaggttgcggtgctggtg
ccgacgacgctgctggcccagcagcactacaacacgttcaccgagcggatggcgcagttc
ccggtgaacatccgcaccctgtcccggttcaacacggcgatcgagaccgagcagaccctg
accggcatcgccgacggcagcgccgacatcgtcctgggcacccaccggctgctgtcctcg
cagacccggttcaagcagctgggcctggtcatcgtcgacgaggagcagcggttcggcgtc
gagcacaaggaatacctcaagcagctgcgtacccacgtcgacgtgctgacgatgtcggcc
acgccgatcccgcggaccctggagatggcggtgaccggcatccgggagatgtcggtgatc
gccaccccgccggaggagcggcacccggtgctcaccttcgtcggggcgtacgccgacaag
caggtcgccgccgcggtccggcgcgagctgctgcgcgacggccaggtgttctacctgcac
aaccgggtcgagtcgatcgagaaggcggcccgccggatccgcgaactggtaccagaagcg
cgggtcgcggtggcgcacggccagatgggcgaggagcgcctggaaaagatcatgctcgac
ttctggaaccgcgagatcgacgtgctggtctgcaccacgatcgtcgagtcgggcatcgac
atcccgaacgcgaacacgctgatcgtggagcgcgccgacatcctcggcctgtcccagctg
caccagatccgcggccgggtgggccgcggccgggaacgcgcctacgcctacttcctctac
ccgggcgagaagccgctgaccgagcaggcgcacgagcggctcgccaccatcgcgcagcac
accgagctcggcgccggcatgttcgtggcgatgaaggacctggagatccgcggcgccggc
aacctgctgggcggccagcagtccgggcacatcgagggcgtcggcttcgacctgtacgtg
cggatggtcggcgaggcggtgcaggcgttcaagggcgaggcgccggaggagatcgcggag
gtgaaggtcgacctgccggtcgacgcgcacctgccgcacgactacatctcggtcgagcgg
ctacgcctggagatgtaccgcaagctcgccgaggtacgcgacgaggcggcgctggacgag
gtccgcgccgagctttccgaccggtacggggagatcccgaccccggtggagaacctgctc
caggtggccaacttccggctgctcgcccggcggtacgggttgaccgacgtgtcgctgcag
ggccggcacgtccggttcagcccgatgccgctgcccgactcgaagcagttgcggctcaag
cggttctacccggacgcgaccttcaagtccactgtggacatggtcagcgtgaaccggccg
acgacccgccgggtcggcggcgagccgatgcgtgacctgccgctgctcaactggtgcgcc
gagctgatcaccaccatcctggacgcccccgccccggcgaagacgggctga
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