Aeromicrobium senzhongii: H9L21_00780
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Entry
H9L21_00780 CDS
T09535
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
asez
Aeromicrobium senzhongii
Pathway
asez03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H9L21_00780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asez03400
]
H9L21_00780
Enzymes [BR:
asez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H9L21_00780
DNA repair and recombination proteins [BR:
asez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H9L21_00780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNL94549
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Position
149913..152294
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AA seq
793 aa
AA seq
DB search
MPRTAPQTVSVDGRLLRLTNSDKVIYPATGTTKADVIAYYVAVAPWLLPHLAGRPVTRKR
WVNGTGSEEQVFFEKNLPDSAPSWIRRVTIKHRSHTNTYPIFESVADLAWAGQVAALELH
VPQWRVDATGVAQNPDRLVIDLDPGPGTGLPECVEIAHAARELLADVGLECVPVTSGSKG
IHLYAPLDGQHDSDYVNAFAKQVAQALEGVMPELVVSDMSKVKRQGKVLVDWSQNNGNKT
TISPYSLRGRAEPTVAVPRDWDELDENLRHLTLDEVPARLAERGDPMAALAAPMTDRLAT
YRSMRDATKTPEPVPDSVVRGRTGDPIFVIQEHHASRLHWDFRLERDGVLVSWALPKGVP
ESSTGNHLAVQTEDHPLEYATFAGDIPKGEYGAGHVTIWDHGHYDLEKWNDHEVIATLHG
TRDGGLGGSKRLALIKTGENWLIHLMKEQNEPAPQKKARSKPPEEAARSGFVPPMLAVLA
GARDASGDEWAYELKWDGIRCLAVVGGEKVRLFSRNHNDVSASYPEVVEELASLGLDAVL
DGEIVAFDESGVPSFGRLQQRMGVTKAADVERLRRTVSTRLLVFDLIEHDGTSLRDQTYD
DRRVALEDLDLTGDVVQVPPAHGGSLDEAVTLSRRHKLEGVVAKRRKAPYEPGARSTDWL
KIKNQEAQEVVVGGWRPSKGGRGIGSLLLGVPVEGGLRYLGRVGTGFTEDERLRLRRLLD
PLTRKTSPFVDEVETAASRDATWVTPKVVGEVVYGDWSPAGHLRHASWRGLRPDKEAAEV
VLEGSSEVRTTPS
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgccacggaccgcgccccagaccgtctcggtcgacggacgcctgctgcgactcaccaac
agcgacaaggtcatctatcccgccaccgggacgacgaaggccgacgtcatcgcgtactac
gtcgcggtcgcgccatggctgctgccgcacctggcaggccgcccggtgacgcgcaagcgc
tgggtcaacgggaccggcagtgaggaacaggtcttcttcgagaagaacctgcccgactcc
gcgccctcgtggatccggcgggtcacgatcaagcaccggtcgcacacgaacacctatccg
atcttcgagtcggtcgccgatctcgcgtgggcggggcaggtggccgcgctcgagctgcac
gtcccgcagtggcgggtcgacgccaccggcgtggcccagaatcccgatcgcctcgtgatc
gatctcgaccccggcccgggaaccggcctgccggagtgcgtcgagatcgcccatgcggcc
cgcgagctgctcgccgacgtcggcctggagtgcgtgcccgtcaccagtggcagcaagggc
atccacctgtacgcgccgctggacggccagcacgactccgactacgtgaacgccttcgcc
aagcaggtcgcccaggcgctcgagggcgtcatgcccgagctcgtcgtcagtgacatgtcc
aaggtcaagcgccagggcaaggtcctggtcgactggagccagaacaacggcaacaagacg
acgatctcgccgtattcgctgcgtggccgtgccgagcccaccgtcgccgtcccgcgcgac
tgggacgagctcgacgagaatctgcgtcacctgaccctcgatgaggtgcccgcccggctg
gccgagcgcggcgacccgatggccgcgctggcggcgccgatgaccgaccggctcgcgacc
taccgctcgatgcgcgatgcgaccaagacgcctgagccggttccggactcggtcgtccgc
gggcgcaccggcgacccgatcttcgtcatccaggagcatcacgccagtcgtctgcactgg
gacttccggctggagcgtgatggcgtgctggtctcgtgggcgctgccgaagggcgtgccc
gagtcgtccacgggcaaccacctggcggtgcagaccgaggaccatccgctggagtacgcc
acgttcgccggcgacatcccgaagggcgagtacggcgccgggcacgtcacgatctgggac
cacgggcactacgacctcgagaagtggaacgaccatgaggtcatcgcgaccctgcacggc
acccgcgacggtggactcggcggatcgaagcggctcgcgctgatcaagaccggcgagaac
tggctgatccacctgatgaaggagcagaacgagcccgccccgcagaagaaggcgaggtcg
aagccgcccgaggaggccgcgcgctcggggttcgtcccgccgatgctggcggtgctggcc
ggcgccagggacgcctcgggcgacgagtgggcctacgagctgaagtgggacggcatccgg
tgcctcgccgtggtcggtggcgagaaggtgcggctgttctcgcgcaaccacaacgacgtg
agcgccagctaccccgaggtcgtcgaggagttggcgagcctgggtctggacgccgtgctc
gatggcgagatcgtggccttcgacgagtccggcgtgcccagtttcggtcgcctgcagcag
cgcatgggcgtcaccaaggccgccgacgtcgagcgactccggcgcacggtgtccacgcgg
ctgctggtgttcgacctgatcgagcacgacggcacgtccctgcgggaccagacctacgac
gaccgccgcgtggcactggaggacctggacctcaccggcgacgtggtccaggtgccgccg
gcccatggcggctcactcgacgaggcggtcacgctcagtcgtcgccacaagctggagggc
gtcgtcgcgaaacggcgcaaggccccgtacgagcccggggcgcggtcgacggactggctg
aagatcaagaaccaggaggcccaggaggtcgtcgtcggcggctggcgccccagcaagggt
ggccgtgggatcggctcgttgctgctcggtgtgcccgtcgagggaggcctgcggtacctc
ggcagggtcggcaccggcttcacggaggacgagcgcctgcgcctgcgccggctcctggac
ccgctgacccgcaagacgtcgccattcgtcgacgaggtcgagactgcggcgtcgcgtgac
gcgacgtgggtgacgccgaaggtcgtgggcgaggtcgtctacggcgactggtcgcccgcc
gggcacctgcgccacgccagctggcgggggctgcggcccgacaaggaggccgccgaggtc
gtgctcgaaggttcttccgaggtgcgtacgactccgtcgtga
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