Alistipes shahii: AL1_20050
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Entry
AL1_20050 CDS
T02578
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ash
Alistipes shahii
Pathway
ash03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ash00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL1_20050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ash03400
]
AL1_20050
DNA repair and recombination proteins [BR:
ash03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL1_20050
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AL1_20050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DUF87
DEAD
AAA_16
AAA_22
AAA_5
UB2H
AAA_33
Motif
Other DBs
NCBI-ProteinID:
CBK64332
UniProt:
D4IN20
LinkDB
All DBs
Position
2290306..2292378
Genome browser
AA seq
690 aa
AA seq
DB search
MDFKLVSDYAPMGDQPEAIGQLVSSIEHGSKHNTLLGVTGSGKTFTVANVIARLNRPTLV
LSHNKTLAAQLYGEFRNFFPENAVEYFVSYYDYYQPEAYLPSTDTYIEKDLQINAEIEKM
RLGTVATLLSGRRDVIVVSSVSCLYGAGNPADFHATAINIKVGQVVSYKHFLYKLVEALY
TRTERELEPATFRVNGDTVDIMAAFGEFGNQCFRVMFFDNEVEAIQSIDPVTGQRIASLD
SITLYATNLFVTTKERINAAVQQIYLDLGKQIEFFERAGRPMEAQRIKQRVEYDLEMIKE
LGYCPGIENYSRYFDGRAAGTRPFCLIDYFPKDYLMVVDESHVTLPQVHAMFGGDRARKE
NLVEYGFRLPAAKDNRPLTFSEFEQLQGTSIYVSATPADYELMKSEGVIVEQLIRPTGLV
DPPLEVRVTLNQIDDLIGEIDKRVKNDDKVLVTTITKRMAEELSKYFDRVGVRNRYIHSD
VDTLERIQILEDLRAGMFDVLVGVNLLREGLDLPEVALVAILDADKEGFLRNVRSLTQIA
GRAARHSQGNVILYADTCTDSMRYAIEQSNRRREKQVRYNMEHEMLPRQAQKSGSGQSAL
LAGRVDTSEVNMTAYPIAEDHYAAAADVQKSYTASENIDALIDKAREEMERAAKSLNFLA
AAKFRDRMYELQKLREENRNQNSQFTIHNS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaagttagtatcggactatgccccgatgggcgaccagccggaggcgatcggg
cagctcgtcagctcgatcgaacacgggtccaaacacaacacgctgctgggcgtgacgggt
tcgggaaagactttcacggtggccaacgtcatcgcgcggctgaaccgtccgacgctggtc
ctgagccacaacaagaccctcgcggcgcagttgtacggggagttccgcaacttcttcccg
gagaacgccgtggaatatttcgtgtcgtattacgactactaccagccggaggcctacctg
ccttcgacggacacctatatcgagaaagacctccagatcaacgccgagatcgagaagatg
cgcctcggcacggtcgccacgctgctgtcgggccgccgcgacgtgatcgtcgtgtcgagc
gtctcgtgcctctacggcgcgggcaacccggcggacttccacgccacggccatcaacatc
aaggtggggcaggtcgtcagctacaagcatttcctctacaagctggtcgaggcgctctac
acccgcaccgaacgcgagctggagcctgcgacgttccgcgtcaacggcgacacggtggac
atcatggcggccttcggcgagttcggcaaccaatgcttccgcgtgatgttcttcgacaac
gaggtggaggccatccagtcgatcgaccccgtcacgggacagcgcatcgcctcgctcgac
agcatcacgctctacgccacgaacctgttcgtgacgaccaaagagcgcatcaacgccgcc
gtgcagcagatctacctcgacctgggcaagcagatcgagttcttcgaacgcgccgggcgt
ccgatggaggcgcagcgcatcaagcagcgcgtggagtacgacctcgaaatgatcaaggag
ctgggctactgcccgggcatcgagaactactcgcgctacttcgacggccgcgccgccggg
acgcgccccttctgcctgatcgactatttcccgaaggactacctgatggtcgtggacgag
agccacgtcaccctgccgcaggtccacgccatgttcggcggcgaccgcgcccgcaaggag
aacctcgtggagtacggcttccgcctcccggcggccaaggacaaccgcccgttgaccttc
tcggagttcgaacagttgcagggcacgtcgatctacgtgagcgccacgcccgcggactac
gagctgatgaagagcgagggcgtgatcgtcgaacagctgatccgccccacggggctggtg
gacccgccgctggaggtgcgcgtgacgctgaaccagatcgacgacctgatcggggagatc
gacaagcgcgtgaagaacgacgacaaggtgctcgtgacgaccatcaccaaacgcatggcc
gaggagctttcgaaatacttcgaccgcgtgggcgtacgcaaccgctacatccactcggac
gtcgacacgctggagcgcatccagattctcgaagacctgcgggccgggatgttcgacgtg
ctggtgggcgtgaacctgctgcgcgagggactcgacctgccggaggtggcgctcgtggcg
atcctcgacgccgacaaggagggattcctgcgcaacgtccggtcgctcacgcagatcgcc
ggacgcgccgcgcgccactcgcagggcaacgtgatcctctacgccgacacctgcaccgac
tcgatgcgctacgccatcgagcagagcaaccgccgccgcgagaagcaggtgcgctacaac
atggagcacgaaatgctgccgcggcaggcgcagaagagcggctcgggacagagcgcgctg
ctggcgggccgcgtcgacacgtcggaggtcaacatgacggcctaccccatcgccgaagac
cactacgcggcggcggccgacgtgcagaaaagctacacggccagcgagaacatcgacgcg
ctgatcgacaaggcccgcgaggagatggaacgcgcggccaaatcgctgaacttcctcgcc
gcggcgaaattccgcgaccggatgtacgaactccagaaactgcgggaggagaaccggaat
cagaattcacaattcacaattcacaattcataa
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