Actinoplanes sichuanensis: Q0Z83_080420
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Entry
Q0Z83_080420 CDS
T09497
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asic
Actinoplanes sichuanensis
Pathway
asic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q0Z83_080420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asic03400
]
Q0Z83_080420 (mfd)
Enzymes [BR:
asic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q0Z83_080420 (mfd)
DNA repair and recombination proteins [BR:
asic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q0Z83_080420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BEL09851
LinkDB
All DBs
Position
complement(8682681..8686295)
Genome browser
AA seq
1204 aa
AA seq
DB search
MQLSGLVPAALRDRGLARARDLAAKGFVDSDSLDLTAPVSLRPFVVATVAGPADLGGAQR
PVLAVTATSREADDLADALGCLIDPDLVAVYPSWETLPHERLSPRSDTVGRRLAVLRRLA
HPGDAPLRVVVAPVRSLLQPQLKGLGDLEPVELVTGREVELEEVARRLSDMAYARVDLVT
KRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIDQVPRLWAPPCREL
LLTPSVRAKAASLAAEHPELAEILDKLAEGIPVEGMESLAPALLSGTDSMELLVDCMPAG
THVLLCDPERIRTRAHDLTRTSDEFLEASWAAAAVGGQAPIDVGAVAFRTLADVRAHAAV
LHQPWWSISPFGLAETPTEALPWEDAPSVEVSPDLGDAIALAAQPVPLYHGDTGRLAGDL
AGWAGQGWAIALVFEGKGTAQRAAELLRDAGLGVTVVDSIPATIEDGRLLVTCGGLNHGF
VDEASRLAVITGNDISGGRGASTKDMRKLPARRRNTIDPLELKTGDFVVHEQHGIGRYIE
LVQRVVNGAEREYLVIEYAASKRGQPGDRLFVPTDQLDQLSRYVGGESPTLHKMGGADWQ
KSKARAKKAVKEIAAQLIQLYAARQASSGHAFGPDTPWQRELEDAFPYTETPDQMAAIIE
VKHDMELQVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHFNTFTE
RMSQFPVQIKQLSRFQTPKETTLTLEGAANGTVDIIIGTHRLLAKSTRFKNLGLIIVDEE
QRFGVEHKEQLKALRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPVLTYVG
AYDEKQVAAAIHRELLRDGQVFYLHNRVESIDRAARKLRELVPEARVAVAHGQMSEEQLE
KVMVGFWEKEFDVLVCTTIVESGIDIPNANTLILERADLLGLAQLHQIRGRVGRGRERAY
AYFLYPREKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEGVG
FDLYVRMVGEAVAQFKGERQEEEPEVKIDLPIDAHLPTEYISVERLRLEMYRKLAEARDD
ARLDEVVGEMKDRYGEPPAPVVNLIAVARFRQLARTYGLTDVSMQGKHIRFSPLALPDSK
QLRLKRYHPDSVYKTGTDQVSVPRPSTRRIGGELLRDQDLLQWCGQLLKDVLGEPVKTGA
GRAT
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgtccggtctggttcccgccgccctgcgcgaccgtggtctcgcgcgcgcccgc
gacctcgcggccaaaggcttcgtcgactcggactcgctcgacctgaccgcgccggtctcg
ttgcgcccgttcgtggtggccaccgtcgccggcccggccgacctcggcggcgcccagcgg
ccggtgctggccgtcaccgccacctcgcgggaggccgacgacctggccgacgcgctcggc
tgcctgatcgaccccgatctggtcgccgtctacccctcctgggagacgctgccgcacgag
cgcctgtcaccccgctccgacacggtcggccgccgtctggccgtgctgcgccggctcgcc
caccccggcgacgcgccgctgcgggtggtcgtcgcaccggtccggtcgctgctgcagcca
cagctcaagggcctcggcgacctggagccggtggagctcgtcaccggccgtgaggtggag
ctggaggaggtcgcgcgacggctctccgacatggcgtacgcgcgggtcgacctggtcacc
aaacgcggcgagttcgcggtccgcggcggcatcctggacgtgttcccacccaccgacgag
cacccgtcccgggtcgagttctggggcgacgaggtcgaggagatccgcaccttcgcggtc
gccgaccagcggaccatcgaccaggtgccgcgcctgtgggcgccgccctgccgtgagctg
ctgctcaccccgtccgtccgggccaaggccgcctctcttgcggccgagcatccggagctc
gccgagatcctcgacaaactggccgagggcatcccggtcgagggcatggagtccctggcc
ccggccctgctcagcggcaccgacagcatggagctgctggtcgactgcatgccggccggg
acacacgtcctgctctgcgacccggagcggatccggacccgggcgcacgacctcacccgt
acctcggatgaattcctcgaggcgtcctgggccgcggccgccgtcggcgggcaggcgccg
atcgacgtcggcgccgtggccttccgcactctggccgatgtccgggcgcacgccgcggtc
ctgcaccagccgtggtggtcgatctcacccttcgggttggccgagacccccacggaggcg
ctcccctgggaggacgcgccgagtgtcgaggtgtcaccggacctcggtgacgccatcgcg
ctggccgcgcagcccgtcccgctctaccacggcgacaccggccgcctcgccggtgacctg
gccggatgggccggtcagggctgggccatcgcactggtcttcgagggcaaggggaccgcg
cagcgcgccgccgagctgctccgcgacgccggtctgggcgtcaccgtggtcgattcgatc
ccggccaccatcgaggacgggagactgctcgtcacctgcggcggcctgaaccacgggttc
gtcgacgaggcgtcccggctcgcggtgatcaccggcaacgacatctccggcgggcgcggc
gcgtccaccaaggacatgcgcaagcttccggcccggcggcgcaacacgatcgacccactc
gagctcaagaccggtgacttcgtggtgcacgagcagcacggcatcggccgctacatcgag
ctggtgcagcgcgtcgtcaacggtgccgagcgggagtacctggtcatcgagtacgccgcg
tccaagcgcggccagcccggggaccggctcttcgtgcccaccgaccagctcgaccagctg
tcccgctacgtcggcggcgagtcgcccaccctgcacaagatgggcggcgccgactggcag
aagagcaaggcccgcgccaagaaggcggtcaaggagatcgccgcccagctgatccagctg
tacgcggcccgtcaggcctcctcgggacacgccttcgggccggacacgccgtggcagcgt
gagctggaggacgcgttcccgtacaccgagacgccggaccagatggccgccatcatcgag
gtcaaacacgacatggagctgcaggtcccgatggaccggctgatctgcggcgacgtcggt
tacggcaagaccgagatcgcggtacgggcggcgttcaaagccgtgcaggacggcaagcag
gtggccgtgctcgtgcccaccacactgctcgcccagcagcacttcaacacgttcaccgag
cggatgagccagttcccggtgcagatcaagcagctgtcccggttccagacgccgaaggag
accaccctcaccctggagggcgccgccaacggcaccgtcgacatcatcatcggcacccac
cggctgctcgccaagtcgacccgtttcaagaacctcggcctgatcatcgtcgacgaggag
cagcgcttcggcgtcgagcacaaggagcagctcaaggccctgcgcgcatcggtcgacgtg
ctgaccatgtcggccaccccgatcccgcggaccctggagatggcgatcaccggcatccgg
gagatgtcgaccatcgccaccccgccggaggagcggcacccggtcctcacctacgtcggc
gcctacgacgagaagcaggtcgccgcggccatccaccgcgagctgctccgcgacgggcag
gtcttctatctgcacaaccgggtcgagtcgatcgaccgggccgcccgcaaactccgtgag
ctggtgcccgaggcccgggtcgcggtggcgcacggccagatgagcgaggaacagctcgag
aaggtgatggtcggcttctgggagaaggagttcgacgtcctggtctgcaccacgatcgtc
gagtcgggcatcgacatcccgaacgccaacaccctcatcctggaacgcgccgacctgctc
ggcctggcccagttgcaccagatccgcggccgggtcggccggggacgcgagcgggcgtac
gcctacttcctctacccccgggagaagccgctcaccgagcacgcccacgagcggctggcc
accatcgcccagcacaccgagctcggcgcgggcatgtacgtggcgatgaaggacctggag
atccgcggcgccggcaacctgctcggcggcgagcagtccggccacatcgagggtgtcggc
ttcgacctctacgtgcgaatggtcggcgaggcggtcgcccagttcaagggtgagcgccag
gaggaggagccggaggtcaagatcgacctgccgatcgacgcgcacctgcccaccgagtac
atctcggtcgagcgcctccgactggagatgtaccgcaagctcgccgaagcccgcgacgac
gcccgcctcgacgaggtcgtcggcgagatgaaggaccggtacggcgaaccgccggccccg
gtcgtcaacctgatcgcggtcgcccggttccggcaactggcccgcacctacggcctcacc
gacgtctccatgcagggtaaacacatcaggttctcgccgctggcgctgcccgactccaag
cagctgcgactcaagcgctaccacccggactcggtctacaagaccggcaccgaccaggtc
agcgtgccccgacccagcacccgccggatcgggggcgaactcctgcgcgaccaggacctg
ctccagtggtgcgggcagctgctcaaggacgtcctcggcgagccggtgaagaccggcgcg
ggccgggcgacgtaa
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