Aeromonas simiae: FE240_06640
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Entry
FE240_06640 CDS
T07073
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asim
Aeromonas simiae
Pathway
asim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FE240_06640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asim03400
]
FE240_06640
Enzymes [BR:
asim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE240_06640
DNA repair and recombination proteins [BR:
asim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FE240_06640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFI54398
UniProt:
A0A5J6WWZ5
LinkDB
All DBs
Position
complement(1412126..1415578)
Genome browser
AA seq
1150 aa
AA seq
DB search
MTAFTLPALPRQAGAKLTLGGLVGSALSLTAATLAREQQRPLLLVTADTPSALRLEQELT
FLLEGSECPVLLFPDWETLPYDTFSPHQDILSQRLETLYHLPQMTRGVVIVPVSTLMLRC
APRSYLDRFSLLLEAGQRLSLQGLRARLAEAGYVAVEQVLEHGEFAARGSLLDLFPMGSQ
TPYRIDFFDDEVDSIRPFDPETQRSSDPVKRVQLLPAREFPTDESAIERFRGHYRERFEI
SRSDGAIYQEVSKGRWPAGIEYYLPLFFEATARLFDYLPADTLLLTVGEIYPAAQRFWND
IQQRYEDRRWDQSRPLLPPSELYLPVEQLFAGLGQYVDVRLQEGPTAGDAGQSDLPVQPL
PELTLDHSQEQPLAALQQFLAGFGGRTLFAVPTEGRREALRDLLARIDLRPAEYASLAEF
LAAGDPLGVLVCPLEGGFILPERALALITETELLGSRVRRSRQRDRAKQLSSDAIIRNLG
ELTQGQPVVHLDHGIGRYLGLETLNAGGLPTEFLTLEYAGGDKLFVPVTNLHLISRYTGS
DNPPSHKLGGEAWSRAKRKAAEKVRDVAAELLDIYAHRAARDGFAFRHNKEAYRQFAAGF
PFEETDDQLNAINAVLGDMCQAKSMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVLVP
TTLLAQQHYDNFRDRFANWPVRVEVLSRFRSAKEQSAVLADLKEGKVDIIIGTHKLLGSD
LTFKDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPAKRLAIKTFVRQHDPAVVREAVLRELKRGGQIYYLHNDVESIEKCAADLAELVPEAR
IGVAHGQMRERELERIMSDFYHQRFNLLVCTTIIETGIDVPSANTIIMDRADHLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKLMTKDAAKRLEAIASLEDLGAGFALATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDTLLADHTEVELRLPALLPDDYL
PDVNMRLSMYKRIASSASQEELDELKVELIDRFGLLPEAAKTLLDIAAFRLMATRLGIKR
LEMTERGGHLDFSEKTAVDPAFLVRLLTEQPRIYKMEGPSRLRFNVPSSGREARLKLVGD
LLGELARHTV
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatttacccttccggccctgccccggcaggccggcgccaaactgacactgggg
ggcctcgttggtagcgccctctccctgaccgccgccaccttggcccgcgaacagcagcgc
cccttgctgctggtgaccgcagacaccccctcggcgctgcgcctcgagcaggagctcacc
ttcctgctcgaggggagcgagtgccccgtgctgctgttcccggactgggagactctgccc
tacgacaccttctcgccgcatcaggacatcctctcccagcggctcgagaccctctatcac
ctgccgcagatgacccgtggcgtggtgatcgtgcccgtctcgaccctgatgctgcgctgc
gccccgcgcagctacctcgatcgcttcagcctgctgctagaggccggccagcgcctgtcg
ctgcaagggctgcgcgcccggctggccgaggccggctacgtggcggtcgagcaggtgctc
gagcacggcgagttcgccgcccgcggctccttgctcgatctcttccccatgggcagccag
accccgtatcgcatcgactttttcgatgacgaggtggactccatccgtcccttcgatccg
gagacccagcgctcgagcgacccggtcaagcgggtgcagctactgccggctcgggagttt
cccaccgacgagagcgccatcgagcgctttcgcggccactaccgcgagcgcttcgagatt
tcgcgcagcgatggggccatctatcaggaggtgagcaaggggcgctggccggccggtatc
gagtactacctgccgctctttttcgaggcgactgcacgcctgtttgactacctgccggcc
gataccctgctgctgacggtcggcgagatctacccggccgcccagcgcttttggaacgac
atccagcagcgctatgaggatcgccgctgggatcagagtcgcccgctgctgccccctagc
gagctctacctgccggtcgagcagctctttgccgggctcggccagtacgtcgatgtgcgc
ctgcaagagggcccgaccgccggtgatgcgggccagagcgatcttccggtccaaccgcta
ccagagctgaccctggatcacagtcaggagcagccgctcgccgccttgcagcagtttctg
gccggctttggcggccgcaccctgtttgcggtgcctaccgaggggcggcgcgaggcgcta
cgcgacctgctggcccgcatcgacctgcgcccggccgagtacgcctcactggccgagttc
ctcgccgccggcgatccgctcggcgtgctggtctgcccgctcgaggggggctttattctg
cccgagcgcgccctggccctcattaccgagaccgagctgctcggcagccgggtgcgccgc
tcacgccagcgcgatcgcgccaagcagctcagttcagacgccatcatccgcaacctgggc
gagctgacccagggccagcccgtggtgcacctcgatcacggcatcggccgctacctcggg
cttgagaccctcaacgccggcggcctgccgaccgagtttctcactctggaatacgccggg
ggcgacaagctgttcgtgccggtcaccaacttgcacctcatcagccgctacaccggctcg
gacaacccgcccagccacaagctcggcggcgaggcctggagccgcgccaagcgcaaggcc
gccgagaaggtgcgcgacgtggcggccgagctgctcgacatctacgcccaccgcgccgcc
cgcgacggctttgcctttcgccacaacaaggaggcctatcgccagttcgccgccggcttc
ccgttcgaggagaccgacgatcagctcaatgccatcaatgcggtgctcggcgacatgtgc
caggccaagagcatggaccgcctggtgtgcggcgacgtgggctttggcaagaccgaggtg
gcgatgcgggcggcgtttgtggcggtgcacggcggcaagcaggtggcggtgctggtgccc
accaccctgctggcccagcagcactacgataacttccgcgatcgcttcgccaactggccg
gtgcgggtcgaggtactgagccgttttcgctcggccaaggagcaaagcgcggtgctggcc
gacctcaaagagggcaaggtggatatcatcatcggcacccataagctgctcggctccgat
ctcaccttcaaggatctggggctgctcatcgttgatgaggagcaccgcttcggggtacgc
cagaaggagaagatcaaggcgctgcgcgccgacgtggacatcctgaccctgaccgccacc
cccatcccgcgcaccctcaacatggccatgtcggggatgcgcgatctctcgatcatcgcc
accccgcccgccaagcggctggccatcaagaccttcgtgcgccagcacgatccggccgtg
gtgcgcgaggcggtgctgcgggagctcaaacgtggcggccagatctactatctgcacaac
gacgtcgagagcatcgagaaatgcgcggccgacctcgccgagctggtgccggaggcgcgc
atcggcgtggcccacggccagatgcgcgagcgcgagcttgagcggatcatgtcggatttc
taccaccagcgcttcaacctgctggtgtgcaccaccatcatcgagaccggcatcgacgtg
ccaagcgccaacaccatcatcatggacagggccgatcacttaggattggcccaactacac
caactgcgtggccgggtcgggcgctcccaccaccaagcctatgcctacctgctcaccccg
catcccaagctgatgaccaaggatgcggccaagcggctcgaggccatcgcctcgctcgaa
gatctcggtgccggcttcgcgctggccacccatgatctggagatccgcggggccggcgag
ctgctcggcgacgagcagagcggccagatccagtcggtcggcttcaccctctacatggag
atgctcgagcaggcggtggaggcgctcaaaagcggcaaggagcccgccctcgacaccctg
cttgccgatcacaccgaggtggagctgcgcctgccggccctgctgcccgatgactacctg
ccggatgtgaacatgcgtctttcgatgtacaagcgcatcgccagcagcgcctcgcaagag
gagctcgacgagctgaaggtggagctgatcgaccgcttcggcctgttgcccgaggcggcc
aagaccctgctcgacatcgctgccttccgtctcatggccactcgtcttggcatcaagcgc
ctcgagatgaccgagcgcggcggccacctcgatttttccgagaagaccgcagtcgacccg
gcctttctggtgcgcctgctcaccgagcagccgcgcatctacaagatggaggggccgagc
cggctgcgcttcaacgtgccgagcagtggccgcgaggcgcgcctcaagctggtcggcgat
ctgctcggcgagctggcccgccacacggtgtaa
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