Actinomyces slackii: NCTC11923_00140
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Entry
NCTC11923_00140 CDS
T06783
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asla
Actinomyces slackii
Pathway
asla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11923_00140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asla03400
]
NCTC11923_00140 (mfd)
Enzymes [BR:
asla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11923_00140 (mfd)
DNA repair and recombination proteins [BR:
asla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC11923_00140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AAA_22
AroM
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
VEG73535
UniProt:
A0A3S4SDG7
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All DBs
Position
1:complement(167311..171012)
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AA seq
1233 aa
AA seq
DB search
MRLTALLPPLLTDPLIAQVVRDASSRTRVDRSLVVAPGARPAILAAMALGQEAVAAIDGG
AGHEADEADEADEQDSGTPLLIITATGRQAEETAAALAGYLPSHDIAVFPAWETLPHERL
SPRSDTVARRLSVLRRLAHPGREGDAGPIRALIVPVRALLAPVIAGLGDIEPIDLLPGVQ
VGLEETARRLESAAYTRVDMVESRGQYAVRGGILDLFPPGEPRPVRVDFFGDEIEEVSSF
AVADQRTIESLPGVRATACRELVLTPQVRERARSLTGAVPGAADLLERISQGIAVEGMES
LAPVLVESMVPLLDLVGDRLAVLLEPEQVRKRAEDLAATTEEFLAAAWTSAASGGTVPVD
LSAAAFAHLAEARALALSTNRGWWSLTSLAAGPQTLQLPLGDPRAYRGQLEAAVKDLGAM
AREGWSVVVATDGPGPGRRMAQLLADGDVPSRIVTDLSESAELGREPLGGPPGDGVVRVT
QASAGHGFLAEGPRLALIAESDLTGRAPAGPRGERALPARRARRSVDPLSLHAGDLVVHA
QHGVGRFIELTRRTVGSGKAAATREYLVIEYAPSKRGQPGDRLLVPTDALDQVTKYVGGD
APALSRMGGADWAKTKARARKAVREIAGELVRLYAARSAATGHAFSPDTPWQAELEEAFP
YTETPDQLSTIDEVKADMERAQPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT
TLLVSQHAQTFTERYAGFPVTVAQLSRFQGAEESEKVLAGLAAGNVDVVVGTHRLITGQV
RFKDLGLVIIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAVTGLREMSTLAT
PPEDRHPILTYVGAYETKQVSAAIRRELLREGQVFFVHNRVEDIESTAARLAELVPEARV
ATAHGQMGEHRLEQVIDAFWRKEIDVLVCTTIVETGLDVTDANTLIVDRADRMGLSQLHQ
LRGRVGRGRERAYAYFLYPGDRPLTETSLERLRTIATNTDLGAGMQVAMKDLEIRGSGNL
LGGEQSGHIAGVGFDLYVRMVSEAVSAYKRSLAAKGGQALPAQEDEEPAELRIELPVDAT
VPEDYIPHERLRLEAYTKFAAARSQDDVSDVLEELADRYGPVPQATELLAGLARLRALAA
ELGVTEIVAQGKSVRFAPVDLPESGRMRLNRLYPGTTLKPATRTIVVPAPGSGRMGAGAL
SGAQVLRWAEVLLRAVVAGDADYETEATAYRRR
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcttgaccgccctgctgcccccactgctgaccgaccccctcatcgcccaggtcgtg
cgcgacgcctcctcgcgcacccgcgtcgatcgcagcctcgtcgtggcccccggggcgcgg
cccgccatcctggcggccatggcgctggggcaggaggcggtggccgcgatcgacggcggg
gcgggccatgaggccgatgaggccgatgaggccgatgagcaggactcgggcaccccgctg
ctcatcatcaccgccaccggccggcaggccgaggagaccgctgcggccctggccggctac
ctgccctcccacgacatcgccgtcttccccgcctgggagaccctgccccacgagcgcctc
tcgccccgctcggacacggtggcccggcgcctgtccgtgctgcgccgcctggcccatccc
gggcgggagggggatgccggtcccatccgcgcgctcatcgtcccggtgcgcgccctgctc
gcccccgtcatcgccggcctgggcgatatcgagcccatcgacctgctccccggggtgcag
gtgggcctggaggagaccgcccgccgcctggagtcggccgcctacacccgggtggacatg
gtcgagtcccgggggcagtacgcggtgcgcggcggcatcctcgacctcttcccgcccggg
gagccccggcccgtgcgcgtggacttcttcggcgatgagatcgaggaggtctcctccttc
gccgtggccgaccagcgcaccatcgagtccctgcccggggtgcgcgccaccgcctgccgt
gagctcgtgctcaccccccaggtgcgagagcgcgcccgctccctgaccggcgccgtcccc
ggggcggccgacctgctggagaggatctcccagggcatcgccgtggagggcatggagtcc
ctggcccccgtcctggtcgagtccatggtccccctgctcgacctggtgggggatcgcctg
gccgtcctgctggagcccgagcaggtgcgcaagcgggctgaggacctggccgccaccacc
gaggagttcctggccgccgcctggacctcggcggccagcggcggcaccgtgccggtggac
ctgtccgccgcggccttcgcccacctggccgaggcccgggccctggccctgtcgaccaac
cggggctggtggtcgctgacctcactggccgccggcccgcagaccctccagctgcccctg
ggcgatccgcgggcctaccgcggccagctcgaggccgccgtcaaggacctgggggccatg
gcccgtgagggctggagcgtcgttgtggccaccgacggccccggccccggccgtcgcatg
gcccagctcctggccgacggcgatgtcccctcccgcatcgtcaccgacctcagcgagtcg
gccgagctggggcgcgagcccctgggcgggccgcccggcgacggcgtcgtgcgcgtcacc
caggccagtgccggccacggattcctggccgagggcccccgcctggccctcatcgccgag
tccgatctcaccgggcgcgccccggccgggccccgcggcgagcgcgccctgcccgcccgt
cgcgcccggcgcagcgtggatccgttgtccctgcacgccggcgacctcgtggtccacgcc
cagcacggggtggggcgcttcatcgagctgacccggcgcaccgtgggctcgggcaaggcg
gccgccacccgcgagtacctcgtcatcgagtacgccccctccaagcggggccagcccggg
gaccgcctcctggtgcccaccgacgccctggatcaggtcaccaagtacgtgggcggggat
gccccggccctgagccgcatgggcggggccgactgggccaagaccaaggcccgggcgcgc
aaggccgtgcgcgagatcgccggggagctggtgcgcctctacgcggcgcgctcggccgcc
acggggcacgccttctccccggacaccccctggcaggccgagctggaggaggccttcccc
tacaccgagacccccgaccagctctccaccatcgacgaggtcaaggccgatatggagcgg
gcccagcccatggaccggctcatctgcggggacgtgggctacggcaagaccgagatcgcg
gtgcgggccgccttcaaggccgtccaggacggcaagcaggtcgccgtgctggtgcccacg
accctgctggtctcccagcacgcccagaccttcaccgagcgctacgccggcttccccgtc
accgtggcccagctctcccgcttccagggcgccgaggagtccgagaaggtcctggcggga
ctggccgcgggcaacgtggatgtcgtcgtgggcacgcaccgcctcatcaccggccaggtg
cgcttcaaggacctgggcctggtcatcatcgacgaggagcagcgcttcggggtcgagcac
aaggagaccctcaaggcgctgcgcacggatgtcgacgtcctgtccatgtccgccacgccc
atcccccgcaccctggagatggccgtgaccgggctgcgggagatgtccaccctggccacc
ccgcccgaggaccgccaccccatcctcacctatgtgggggcctacgagaccaagcaggtc
agtgccgccatccgccgagagctgctgcgcgaggggcaggtgttcttcgtccacaaccgg
gtcgaggacatcgagtccaccgcggcgcgcctggccgagctcgtccccgaggcgcgggtg
gccaccgcccacgggcagatgggcgagcaccgcctggagcaggtcatcgacgccttctgg
cgcaaggagatcgacgtcctggtgtgtaccaccatcgtggagacgggcctggacgtcacc
gacgccaacacgctcatcgtcgaccgcgccgaccgcatggggctctcccagctccaccag
ctgcgggggcgcgtgggccgcgggcgcgagcgcgcctacgcctacttcctctaccccggg
gaccggcccctgacggagacctccctggagcgcctgcgcaccatcgccaccaacaccgat
ctgggggcgggcatgcaggtggccatgaaggacctggagatccgcggctcgggcaacctg
ctggggggcgagcagtccgggcacatcgccggggtgggattcgacctctacgtgcgcatg
gtctccgaggccgtctcggcctacaagaggtccctggccgccaagggcggtcaggcgctg
cccgcccaggaggacgaggagcccgccgagctgcgcatcgagctgccggtggatgccacc
gtgcccgaggactacatcccccacgagcgcctgcgcctggaggcctacactaagttcgcc
gccgcccggtcgcaggacgacgtcagcgatgtcctcgaggagctggccgaccgctacggt
cccgtgccccaggccaccgagctcctggcgggactggcgcggctgcgcgccctggccgcc
gagctgggggtcaccgagatcgtcgcccagggcaagtcggtgcgattcgccccggtggat
cttcccgagtcggggcgcatgcgactgaaccgcctctacccgggcaccaccctcaagccc
gccacccgcaccatcgtggtgcccgcccccggctcgggccgcatgggggccggggcgctg
tcgggcgcccaggtgctgcgctgggccgaggtactgctgcgcgccgtggtcgccggggac
gccgactacgagaccgaggccaccgcctaccggcgccgctga
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