Candidatus Arthromitus sp. SFB-mouse-Yit: MOUSESFB_1358
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Entry
MOUSESFB_1358 CDS
T01857
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asm
Candidatus Arthromitus sp. SFB-mouse-Yit
Pathway
asm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MOUSESFB_1358 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asm03400
]
MOUSESFB_1358 (mfd)
Enzymes [BR:
asm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MOUSESFB_1358 (mfd)
DNA repair and recombination proteins [BR:
asm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MOUSESFB_1358 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAK80500
LinkDB
All DBs
Position
complement(1522492..1526001)
Genome browser
AA seq
1169 aa
AA seq
DB search
MKLEGINNRIFNSEKFQNILFSIENNKNIDVCGLVGSTKANIIYGIFEKINRKIFVISAS
NYEAKEMYENIRVYTDNCVYFQERENVFYNIEAFSSDLKFDRIIAFREVCSTENKIICTS
IESLISLYMSNNSRFIKLDIDIYINMEYEFEKFINDIFSIGYEKVYKVEQKGQYAVRGGI
IDIFPINFSCAYRIEFFGDTIDNIKSFNVTTQMSIESIQSIKIIQCKEFILNDEEKSKLY
ENLEKDFREHITGINDLEVKEKLSTKFNFILDKLREGNFYDEYNIIIPYLHKYLSEFFEF
MSNSVVLLDEYKKCMETLDIVYDRFISNFDMLLLRGEVLPNQINLLIDKDKLISKVNKIN
NLSFNLFNYYNKDTIIEFKTKNIIKMDGKISVILNEIKDKLSEDYCVIILSSSEPRCKKL
KELLIEYGIESTLCNDINNICNGKVFISLGYLNEGYDFSDFSLYVICDQEIFGYDQQRKQ
RKSFSSSKKGLTKIRSFYDLKPGDYIVHVNHGIGVYKGIKKIDFQGIERDYLDIEYDKKD
KLYVPIEQLDLVQKYIGIEGKSPKVNKLGGSEWIKIKTKTRRSIDEIAYNLVKLYAKRNI
LKGYAYSKDSTWQSQFEQEFPYVETPDQLLAIEDIKKDMESDKPMDRLLCGDVGYGKTEV
ALRAMFKAVVDKRQVVFLVPTTILADQHYNNIKKRFEGFPFNVDVLSRFRTTKQQKETLS
KLKLGEIDIIVGTHRLLSKDVQFKNLGLLIIDEEQRFGVKHKEKIKEMKESIDVLSLSAT
PIPRTLHMSMVGVRDISVIDTPPEDRYPVQTFVVEYSDQLVRGAIMKEISRCGQGFFLYN
SVENIDKMNIYLQNLVPECRFSVIHGQMGEREIEDILIKFLNKDIDFLVCTTIIETGIDI
KNANTIIIHNADKFGLSQLYQLRGRVGRSNKVAYAYLTYKKDRVLSEVAEKRLKTLKDFT
ELGSGFKVAMKDLEIRGSGNLIGESQHGQMSVVGYDLYCKMLEDAIKMLQGEVTCVEVNT
VVDIKIDVYIKDNYIEDEMQKLEIYKKISCIEDKKDISYIKEELMDRFSVIPFEIDNLIK
ISYIRALGKKLGFSQIKEIGDKILFEYKSKDFLDDYGFNYICNNYQGKVTFNLGDKPCFY
YKIDCDDKSVMIDEFIKLLENLIKDVKKQ
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaaactagaaggaattaataatagaatttttaattctgaaaaatttcaaaatatatta
ttttcaatagaaaataataagaatattgatgtatgtggacttgtcggttccactaaggct
aatataatttatggtatatttgaaaaaattaataggaaaatttttgtaatatcagcaagc
aattatgaggctaaagaaatgtatgaaaatataagagtttatacagataattgcgtgtat
tttcaagaaagagaaaatgttttttataatatagaggcgttttcaagtgatttaaaattt
gatagaattatagctttcagagaggtgtgttcaactgagaataagataatatgcacttct
atagagagcttaatttcattatatatgagtaacaatagtaggtttattaaattagatatt
gatatttatataaatatggagtatgaatttgaaaagtttataaatgatatattttctatt
ggatatgaaaaagtatataaggttgaacagaagggacagtatgctgtaagaggtggaatt
atagacatttttcctataaacttctcatgtgcttatagaatcgaattttttggagataca
atagataatataaagagttttaatgtgacaactcaaatgagtattgaatctattcaaagt
attaaaatcatacagtgtaaggaatttattttaaatgatgaagagaaaagtaagctttat
gaaaatcttgagaaggattttagagaacatataacagggataaatgatttagaggtgaaa
gaaaaattaagcaccaagtttaattttatattggataaattaagagagggtaatttttat
gatgaatacaatattataataccctatttacataaatatctttctgaattttttgaattt
atgagtaactctgttgtacttttagatgagtataaaaaatgtatggaaaccttagatata
gtatatgataggtttattagtaattttgatatgcttcttttgagaggtgaggttttacca
aatcaaattaatcttcttatagataaagataagttaatatcaaaggttaataaaataaat
aatttatcatttaatttatttaattattataataaagatactattattgaatttaaaact
aagaacatcataaaaatggatggcaaaataagcgttatattaaatgaaataaaggataaa
cttagcgaagactattgcgttataatactatcttcatctgaacctagatgtaaaaaatta
aaggaattattgattgaatatggtatagagtctactttatgtaatgatattaacaatatt
tgtaatggtaaggtttttatatctcttggatatttaaatgaaggatatgatttttcagat
tttagtttatatgttatatgtgatcaggaaatttttggctatgatcaacaaagaaaacag
agaaagagcttctcgtcatctaaaaaaggattgacgaaaataaggagtttttatgatctt
aaaccaggtgattatatagtacatgtgaatcatggaattggggtatataaaggaattaag
aagatagattttcagggaattgagagagattatttagatatagagtatgataaaaaagat
aagttatatgttcctatagaacagcttgatttggttcaaaagtacataggtattgaaggt
aagagtcctaaagtaaataaattaggtggaagtgaatggattaagataaagacaaaaact
aggaggtccattgatgaaattgcatataatttagttaaattgtatgctaagagaaatatt
ttaaagggatatgcttattctaaagatagtacttggcagtctcaatttgagcaagaattc
ccatacgtagaaacaccagatcaattattggctatagaagatattaaaaaggatatggag
tcagataaacctatggatagactactatgtggtgacgttggatatgggaaaactgaggtt
gcccttagagcaatgtttaaggctgtagttgataaaagacaggttgtatttttagtacca
acaacgattcttgcagatcagcattataataatataaagaagaggtttgaaggattccca
tttaacgttgatgttttaagtaggtttagaaccactaaacagcagaaggagacattatct
aaattaaaacttggagagattgatataattgtaggaacccatagacttttatctaaagat
gttcaatttaaaaatttaggacttttaattatagatgaggaacaaaggtttggagttaaa
cataaagaaaagataaaagagatgaaagagagtattgatgttcttagtttaagtgcaaca
cctatacctagaacacttcatatgtcaatggttggtgtacgcgatattagtgtaatagat
actccacccgaagatagatacccagttcaaacttttgttgttgaatatagtgatcaatta
gtaagaggagctattatgaaagaaatttcacgatgtggacaaggatttttcttgtataat
agtgttgaaaacatagataaaatgaatatttatcttcaaaatttggttcctgaatgtaga
ttttctgttattcatggtcaaatgggcgaaagagaaatagaagatatattaataaaattt
ttaaataaggatatagattttcttgtctgtacaactataattgaaacagggattgatata
aaaaatgctaatactataattatacataatgcagataaatttggtttatctcagttatat
caactaagaggtagagttggtagaagtaataaagtagcatatgcatatctaacttataaa
aaagatagagttttaagtgaagttgcagagaagagattaaagacgctcaaggattttaca
gaacttggatctgggtttaaagtagcaatgaaagatttggaaattaggggatctgggaat
ttaattggtgagtctcaacatggccaaatgagtgttgttgggtatgatctttattgtaag
atgcttgaggatgctataaagatgcttcagggagaagttacttgtgtagaagtaaataca
gttgttgatataaagattgatgtctatataaaagataattacatagaagatgaaatgcaa
aaacttgaaatatataaaaaaatatcgtgtattgaggataaaaaggatatatcatatata
aaagaggaacttatggataggttttctgtaataccttttgagatcgataatttaataaag
atatcatatataagagctctagggaagaaattgggtttttctcaaataaaagaaataggc
gataagattttatttgagtataagagcaaagattttttagatgattatggatttaattat
atatgtaataattatcaaggtaaggtaacatttaatttgggtgataagccttgtttttat
tataaaattgattgtgacgataagagtgttatgattgatgaatttataaaattgttagaa
aatttaataaaagatgttaaaaaacaataa
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