Alligator sinensis (Chinese alligator): 102384608
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Entry
102384608 CDS
T02922
Symbol
UPF1
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
asn
Alligator sinensis (Chinese alligator)
Pathway
asn03013
Nucleocytoplasmic transport
asn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102384608 (UPF1)
03015 mRNA surveillance pathway
102384608 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asn03019
]
102384608 (UPF1)
Enzymes [BR:
asn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102384608 (UPF1)
5.6.2.5 RNA 5'-3' helicase
102384608 (UPF1)
Messenger RNA biogenesis [BR:
asn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102384608 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102384608 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102384608
NCBI-ProteinID:
XP_025066110
UniProt:
A0A3Q0H6R1
LinkDB
All DBs
Position
Unknown
AA seq
1054 aa
AA seq
DB search
MEYSFVVQGVKVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLR
YKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQS
ALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR
PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC
AKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERE
LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ
LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV
TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA
KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN
EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALXXXXXXXXXXLNYYKEQKVLVEGPLN
NLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHD
QIGMISAGPSHVPAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNR
FGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLG
DEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggaatacagttttgtggtgcagggtgttaaagttaatggacctgatggcatcctacag
aacggtgccgtggatgataatgtggctaaaaccagccaacttctggcagagttgaacttt
gaagaagatgaagaagacacctattataccaaggatcttcctgtgcatgcttgcagttac
tgtggcattcatgacccagcctgcgtggtttactgcaacaccagcaaaaagtggttctgc
aatgggcgtggcaatacatccggcagccacattgtaaaccatctggtgagagccaaatgc
aaggaggtaactctccacaaagacgggcctcttggagagactgtcttggagtgctacaat
tgtggatgccggaacgtgttcctccttggcttcattcctgcaaaggctgactcggtagta
gtcttgctgtgcaggcaaccatgtgccagtcagagcagtttaaaggatattaattgggac
agttcacagtggcagcctcttatccaagaccgctgcttcctttcctggctggtaaagatt
ccctctgaacaggagcagctgcgagcccgtcagatcacagctcagcaaattaacaaactg
gaggaactctggaaggaaaacccctctgcaacccttgaagacttggaaaaacctggtgtt
gatgaagaaccgcagcatgtcttacttcgatatgaggatgcttatcagtaccaaaatatc
tttggacctttagttaagctggaggcagactatgacaagaaactcaaggaatcccagacc
caggataacatcacagtgagatgggacctaggcttaaacaagaagagaattgcttacttc
actttgccaaagactgactcagatatgcgtcttatgcaaggagatgagatctgcctgagg
tataaaggagacctggcccctctgtggaaaggaattggtcatgttatcaaagtcccggat
aattatggtgatgagatagccattgagctgagaagcagcgttggagcacctgtggaggtt
actcataacttccaggtggattttgtttggaagtctacttcatttgacagaatgcaaagt
gctttaaaaacatttgcagtggatgaaacttctgtgtctggctacatctaccacaagctg
ttaggtcatgaggtagaagatgtgattattaaatgccagctgccaaagcgttttacagcg
caaggactgcctgacctcaaccattctcaggtttatgctgtgaagactgtcttgcagcgt
cctctgagccttatccaaggtccccccggcacaggaaaaacagtgacatcagcaacgatt
gtctaccatctagctaggcagggcaatgggcccgtgttagtttgtgccccaagtaacata
gctgtggatcagctgaccgagaagattcatcagacgggactgaaagtggttcgcctgtgt
gctaaaagtcgtgaggcaatcgattctcctgtatctttcttggcattgcacaaccagatc
agaaacatggacagtatgcctgagcttcagaaactgcagcagctgaaagatgaaactgga
gaattgtcatctgctgatgagaagcgttatcgtgcactgaagcgaacagcagaacgtgaa
ttacttatgaatgcagatgttatctgctgcacgtgtgtgggagcaggtgacccgagactt
gcgaaaatgcagttccgctccattttaattgatgaaagcacgcaggctactgaaccggag
tgtatggtgcccgtggttcttggagcaaagcagctgatcctcgtcggtgaccactgccag
ctgggtcctgttgtgatgtgtaagaaagctgcaaaggcaggcctgtctcagtctctcttt
gagaggcttgtggtgttggggatccgtccaatccgcctgcaagtgcagtatcggatgcac
cctgcacttagtgcttttccatccaacatcttctacgagggctctctccagaacggcgtc
actgcagcggaccgtgtgaaaaagggatttgatttccagtggccccagccagataagccg
atgttcttctatgtgacccaggggcaggaagaaattgccagttcaggcacctcttacttg
aacaggacggaagctgctaatgtggagaagataactacaaaactgttgaaagctggtgcc
aaaccagatcagattggcattattacaccctacgagggccagcgatcttacctggtgcag
tacatgcagttcagcgggtccttgcatacaaagctctaccaggaagtggaaatcgcaagt
gtcgatgctttccagggacgggagaaggattttattatcctttcttgcgtaagagccaat
gagcaccaaggaattggatttttaaatgatcccagacgtcttaacgtggctcttaccaga
gcaagatatggagtcattattgttgggaacccaaaggctctgnnnnnnnnnnnnnnnnnn
nnnnnnnnnnngctgaactactacaaagagcagaaggtgctggtagagggaccactgaac
aacctccgggaaagcctcatgcagttcagcaagcctcgtaaactcgtcaataccatcaac
cctggtgcccgtttcatgacgactgccatgtatgacgcacgtgaagctattatcccagga
tctgtctatgacaggagcagtcaagggcgcccatccaacatgtacttccagactcacgac
cagatcgggatgattagtgctgggcccagccacgtccctgcgatgaacattcctatccct
ttcaatctcgtcatgccacccatgccgcccccaggatacttcgggcaggccaatggcccg
gcggcaggacgcggcacacccaaagggaagactggccgtggcgggcgccagaaaaaccgt
tttgggattcctggaactagccagtcaaaccttcccaacagtcaagcgagccaagatgtg
gtgtcccagcctttctcccagggtccactgactcagggctatatctccatgagtcagccg
tcgcagatgagccagccaggactctcccagccagaattatcacaggacagttaccttggt
gatgagtttaaatctcagattgatgtggcgctgtcacaggattctacctaccagggtgaa
cgtgcatatcaacacggtggagtgacgggattgtcacagtattag
DBGET
integrated database retrieval system
