Agromyces soli: MTP13_02610
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Entry
MTP13_02610 CDS
T08198
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
asoi
Agromyces soli
Pathway
asoi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MTP13_02610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asoi03400
]
MTP13_02610
Enzymes [BR:
asoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MTP13_02610
DNA repair and recombination proteins [BR:
asoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MTP13_02610
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UOE26688
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Position
complement(546038..548554)
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AA seq
838 aa
AA seq
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MADAERQLVEVDGRRLRLTNLDKVMYPETGTTKGEVISYYAEIAAVMVPHVAGRPVTRKR
WVHGVGTAEHPETPFFEKNLAEHAPEWLRRGVIQHSDGPKTYPIAGDRASLVWMAQQAAL
ELHVPQWRFAPDGSAANPDRMVFDFDPGEGVGLAECAEVARLVRDVIGGMGLEAVPVTSG
SKGLHLYAGLDGSQSSEQVSDVAHELARALEADHPELIVSSMRKALRTGKVLIDWSQNNG
KKTTIAPYSLRGRLRPSVAAPREWAELDEPGFAQLEFHEVLARVAAGGDPMARLGRAASP
GVDALDAYRAKRTVGATPEPIPAAHERIETAGADASGATDASGRRFTIQEHHARRLHFDL
RLERDGVLRSWAVPKGVPETTGVNHLAVQTEDHPLEYLDFEGTIPAGEYGAGTMTVWDTG
EYEVEKWRDDELIFTLEGRVGGPLGRVRLALIRTDGDGEKSSWLLHRMKEQRAGQRHAAP
AAAPEASAIPAPAEASASPLAPAQPAAAPAPRTAAARPPRIPYAPMLAVAGAPGLAGEDR
ALEWKWDGIRVLARVEDGATRLASRTGRDVTDVYPELGGLASALRADAVVDGEIVALDED
GRPDFGLLQHRMNLADPREIAKTAPRIPVRLLLFDVLELAGSPTVDEPYLRRRERLERLL
RPGTGVPVEVPAPAEGSVETALAEAERLGLEGIMAKRRDSPYRAGERSDDWLKLKLARTQ
EVVIGGYRRGVGTRTGRIRSLLLGLPGERGLEYVGRVGSGFRERELDRLLARFRELERET
SPFVEVPAADAADAVWLAPELVGEIEFGSWTRTGVVRHARWRGLRPDLDPAGVRREGG
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcggagcgccagctcgtcgaggtcgacggtcgacggctgcggctgacgaac
ctcgacaaggtcatgtaccccgagacgggcacgacgaagggcgaggtgatctcgtactac
gccgagatcgccgccgtcatggtgccgcacgtcgccgggcggccggtcacccgcaagcgc
tgggtgcacggcgtcggcaccgccgagcacccggaaacgccgttcttcgagaagaacctc
gccgagcacgcgccggagtggctgcgccgcggggtcatccagcactccgacggacccaag
acgtacccgatcgcgggcgaccgggcgagcctcgtctggatggcgcagcaggccgcgctc
gagctgcacgtgccgcagtggcgcttcgcgccggacggctccgccgcgaaccccgaccgg
atggtcttcgacttcgacccgggggagggcgtcggcctcgccgagtgcgcggaggtggcc
cggctcgtgcgcgacgtcatcggcggcatgggcctcgaggcggtgcccgtcacgagcggc
agcaagggtctgcacctctacgcggggctcgacggctcgcagagctccgagcaggtgtcg
gacgtcgcccacgagctggcgcgcgccctcgaggccgaccaccccgagctcatcgtgtcg
agcatgcgcaaggcgctgcgcacgggcaaggtgctcatcgactggagccagaacaacggc
aagaagacgacgatcgcgccgtactccctgcgcgggcggctgcgcccctccgtcgcggca
ccgcgggagtgggccgagctcgacgagccgggcttcgcccagctggagttccacgaggtg
ctcgcccgggtcgccgcgggcggcgatccgatggcgcgcctggggcgcgcggcgtcgccc
ggcgtcgacgcgctcgacgcgtaccgcgccaagcgcacggtcggcgcgacgcccgagccg
atcccggcggcgcacgagcgcatcgagacggcgggtgcggatgcctcgggcgcgacggat
gcctcgggccgccgattcacgatccaggagcaccacgcccggcggctgcacttcgacctg
cggctcgagcgcgatggggtgctgcggagctgggcggtgccgaagggcgtgccggagacg
accggcgtgaaccacctcgccgtgcagaccgaggaccatccgctcgagtacctcgacttc
gagggcaccatccccgccggcgagtacggcgcgggcaccatgacggtgtgggacaccggc
gagtacgaggtcgagaagtggcgcgacgacgagctcatcttcaccctcgaggggcgcgtc
ggcggtccgctcgggcgggtgcggctcgccctcatccgaaccgacggggacggcgagaag
agcagctggctgctgcaccgcatgaaggagcagcgcgccgggcagcggcacgcggcgccg
gccgccgcgccggaggcatccgccatccccgctccggccgaggcatccgcgtccccgctc
gccccggcgcagccggccgccgcgcccgcaccgcgcacggccgcggcccggccgccgcgc
atcccgtacgcgcccatgctcgccgtcgcgggggcgcccggcctcgcgggcgaggaccgt
gcgctcgagtggaagtgggacggcatccgcgtgctcgcccgcgtcgaggacggcgcgacc
cgcctcgcgagccgcacggggcgggacgtcaccgacgtctaccccgagctcggcgggctc
gcctcagcgctgcgggccgacgccgtcgtcgacggcgagatcgtcgcgctcgacgaggac
ggccgccccgacttcggtctgctgcagcaccggatgaacctcgccgacccgcgcgagatc
gcgaagacggcaccgcgcatcccggtgcggctgctgctcttcgacgtgctcgagctcgcc
ggttcgccgacggtcgacgagccgtatctgcgccggcgcgaacggctggagcggctgctg
cggccgggcaccggcgtgccggtcgaggtgccggcccccgcggagggctcggtcgagacc
gcgctcgccgaggccgaacggctcggcctcgaagggatcatggcgaagcggcgggactcg
ccgtaccgggccggggagcgcagcgacgactggctgaagctgaagctcgcgcgcacgcag
gaggtggtgatcggcggctaccggcgcggcgtcggcacgcgcaccgggcggatccgctca
ctgctgctcgggctgcccggcgaacgggggctcgagtacgtcggccgggtcggcagcggc
ttccgcgagcgcgagctcgaccggctgctcgcccgcttccgcgagctggagcgcgagacc
tcgcccttcgtcgaagtgccggccgcggacgccgccgacgcggtgtggctcgcgcccgaa
ctcgtcggcgagatcgaattcggctcgtggacccgcacgggggtcgtgcggcacgcgcgc
tggcgcggcctccggcccgacctcgacccggccggcgtgcgtcgggagggcgggtga
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