Alteromonas stellipolaris LMG 21861: AVL57_08400
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Entry
AVL57_08400 CDS
T04545
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asq
Alteromonas stellipolaris LMG 21861
Pathway
asq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AVL57_08400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asq03400
]
AVL57_08400
Enzymes [BR:
asq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVL57_08400
DNA repair and recombination proteins [BR:
asq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AVL57_08400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
SecA_DEAD
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMJ73996
LinkDB
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Position
1714272..1717778
Genome browser
AA seq
1168 aa
AA seq
DB search
MTATLLSLPLPTQKKSASVQDHKQWGQLQGSSAALCITQAQAQYNGPIVLVTADTPSALK
LEKELAFFMPSNKAEQPNVPITVFPDWETLPYDSFSPHQDIVSQRLETLFRFTQQVNGIF
IVPVNTLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRG
SIIDLFPMGSDKPFRIDLFDDEVDSIRFFDTETQRSGDAVEKIKLLPAREFPTDKESITL
FRQRFLEKFDANNASESVFSQVTKGTMPSGVEYYLPLFFDKTATLFDYLHPKSVLLLHGD
VQDASEFFWADIQERYEQHRYNPARPLLPPEDLFLPINTLFGEIKQWPRVSLSKEIIEEK
PGSFNLGCDKLDDIAINTQKKVPAEQLIATVNNAKKRGAKVLFCAETQGRREGLLTVLQK
AGIKPKAAESFNSFVSASDNIGITVGMVENSFNWRSDSGELLFITETELLGHKVSQRRLR
DKRTATDESAIIRNLAELTTGQPVVHLDHGVGRYIGMQTLDAGGVTTEYLCIEYAKQAKL
YVPVASLHLISRYTGGDADHAPLNSLGTDAWSKAKQKAAEKVRDVAAELLDVYARRAAKP
GFAYNIDWDDYQKFSDSFPFEETPDQAQAIAAVIHDMGSPQAMDRLVCGDVGFGKTEVAM
RAAFLAANQGKQVAILVPTTLLAQQHHENFKDRFAAWPFEIEVMSRFVSAKGQKETMQRL
ADGKVDIVVGTHKLLSNDIKFSDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPI
PRTLNMAMSGMRDLSIIATAPARRLSIKTFVQQRNKAIIREAIMREILRGGQVYFLHNEV
DTIARTAEEIAEIVPEARIAMGHGQMRERELENVMSDFYHQRYNVLVCTTIIETGIDVPS
ANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAAKRLDAISKLEDL
GAGFALATHDLEIRGAGELLGDDQSGQIASIGFSLYMDMLDRAVTSLKEGKEPSLDDAMA
GHTEVELRIPALLPDDYIADVNTRLSLYKRLASCKNQDDIDEFQVECIDRFGLLPEPAKN
LVEVAEIKIKAEAIGVLKVDLSAQGGTIEFTDTTKVDPGYIIQLVQTKPNTFKFEGSQKL
RLVKQTDTAKARIAFISDIIADLAKESR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaactcttttatctttgcctttgccgacccagaaaaaatccgcctctgtgcaa
gaccacaagcaatggggtcagttacaaggcagcagcgccgcactgtgcatcactcaagca
caagcccaatacaacggccctattgtgctggtaacagccgacacaccttcggcgctaaaa
ctagaaaaagagttggcgttttttatgcccagcaataaagctgagcaaccaaatgtacct
attacggtatttcccgattgggaaaccctgccctacgattcgttttctccacaccaagat
attgtctcgcagcgcttagaaactttatttcgctttacccagcaggtaaatggtattttc
attgtgccggtaaacaccttgatgcaacgtttggcacctaccgactacctcgcaaaatat
ttgttgatgctgaataagggagacacccttgatagagaccaattcagacgcaacttagaa
caagcgggctacttacacgtaagccaggtaatgagccacagtgaattttcggtgcgcggt
agcattatcgatttattccccatgggtagcgacaagccgtttcgtattgatttgttcgac
gacgaagtagactctattcgctttttcgataccgaaacccaacggtctggcgatgcggtt
gaaaaaataaagctgttgcccgcacgggaattccctaccgacaaagaatctattaccctt
ttccgtcagcgctttttagaaaagttcgatgcgaacaacgcctcagaatcggtgttttct
caagtcacaaaaggcaccatgccaagcggcgttgaatattacttgccgctgttttttgat
aaaaccgctaccttgtttgattacctgcaccccaaaagtgtgctgttgttacacggtgac
gtacaagatgccagcgagtttttctgggcagacattcaagagcgttacgaacaacacaga
tacaacccagcaaggcctttactgccacctgaagatttatttttacctataaataccttg
ttcggcgaaattaaacagtggccgcgtgtatccctgtcaaaagaaatcattgaagaaaag
ccgggcagtttcaacttaggctgcgataagcttgacgatattgctattaacacccaaaag
aaagtaccggctgaacaattaattgccacggtgaacaatgccaaaaagcgcggtgctaaa
gtgctattttgcgcagaaacccaaggccgccgtgaagggctgcttaccgtattacaaaag
gcgggcattaagcccaaagcggctgaatcgttcaactcgtttgttagtgccagcgataac
attggtattaccgtaggcatggttgaaaatagctttaactggcgaagtgatagtggcgaa
ttgctgtttatcaccgaaaccgagctattaggccataaagtaagccagcgtaggcttcgc
gataagcgtacggctaccgacgaaagtgccattattcgcaacttggctgagcttactacc
ggtcagcccgttgtgcatttagatcatggtgtgggccgttacattggcatgcaaacccta
gatgcaggcggcgttaccactgaatacttgtgcattgaatacgccaagcaagccaagctg
tatgtgcccgtagcgtcattacacctaatttcaaggtacacgggcggcgatgccgatcac
gcaccgcttaattcacttggcactgatgcatggagcaaagctaaacaaaaagcggctgaa
aaagtacgcgatgtggccgctgaattacttgatgtatacgcacgacgtgccgcaaagcca
ggctttgcttacaatattgattgggacgactaccaaaaattctccgacagcttcccgttt
gaagaaacgccggatcaggcacaagctattgcggcggttattcatgacatgggtagccca
caagccatggacagattggtatgcggtgacgtaggtttcggtaaaaccgaagtcgccatg
cgtgcggcattcttagccgcgaaccaaggcaaacaagtggctattttggtgcccactacc
ctacttgcccaacagcatcacgagaactttaaagatagattcgccgcatggccgtttgaa
attgaagtcatgagtcgattcgttagcgctaaaggccaaaaagaaaccatgcagcgcctt
gccgatggcaaggtagatattgtagtaggcacgcataagttgctgtcgaacgatattaaa
ttcagcgacttaggcttagtgatcattgatgaagagcatcgcttcggggtgcgtcaaaaa
gagaagctaaaatcccttcgcgccgatgtagatattcttacccttaccgctacgcctatt
cctagaaccctgaatatggctatgtcgggtatgcgtgacttatcgattattgctaccgcg
ccagcaagacgtttatcaattaaaacctttgtacaacaacgcaataaagccatcattcgt
gaagctataatgcgtgaaattttacgtggtgggcaggtgtacttccttcacaacgaagta
gataccatagccagaactgccgaagaaattgccgaaattgtacctgaagcgcgtattgcc
atgggccacggccaaatgcgcgaacgcgaacttgaaaatgtaatgagcgacttctaccac
cagcgctacaacgtgttggtgtgtaccaccattattgaaaccggtattgatgtacccagt
gctaataccatcataatggacagagccgatcacttaggcctagcccaattgcaccaattg
cgtggccgtgtggggcgttcacaccaccaagcctacgcttatttacttacgccgcatcct
aagcgtatgaccaaagacgcagctaagcgactagacgctatttctaaacttgaagattta
ggggcaggttttgcgctagccacccacgaccttgaaattcgtggcgcaggtgaactattg
ggcgatgaccagtctggccaaattgccagtatcggatttagcctttacatggatatgcta
gatagagcggtaacatcactaaaagaaggcaaagagccttcgctagacgatgccatggca
ggccacacagaagttgagcttcgtattcctgcccttctgcctgatgactatattgctgac
gtaaacactaggttatcgctatataaacgcttagccagctgtaaaaaccaagacgatata
gacgaattccaagtagaatgtatcgaccgcttcggtttattgcctgaacccgctaaaaac
ttagtagaagtggcggaaataaaaataaaagcagaagctataggcgtgcttaaagtagac
ttgtcagcacaaggcggtaccatagagtttacagataccaccaaggttgaccctggctat
attattcagcttgtacaaaccaagccaaatactttcaaatttgaaggcagccagaaacta
cgattagtaaaacagactgataccgcaaaagcgcgcattgcgtttattagcgatatcatt
gccgaccttgcaaaggagtcgcgataa
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