Archaeoglobus sulfaticallidus: Asulf_01568
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Entry
Asulf_01568 CDS
T02642
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ast
Archaeoglobus sulfaticallidus
Pathway
ast03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ast00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Asulf_01568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ast03400
]
Asulf_01568
Enzymes [BR:
ast01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Asulf_01568
DNA repair and recombination proteins [BR:
ast03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Asulf_01568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AGK61545
UniProt:
N0BMR8
LinkDB
All DBs
Position
1403743..1404738
Genome browser
AA seq
331 aa
AA seq
DB search
MAAKDQITKDWFYKNIDPMLAVKGKPFSSSDYLYEIKWDGTRCIAFVDVDENRLRLQNRR
FLDIKYRYPEFRFHEQFSKSVVLDGEIVVLHNGRSDFRLLQKREQIENRAKIRILSSMYP
AVYVVFDILWDGEWIMDLPLIERKKILSELTDTAENLMISDYILGEGTEFYKKAIELGFE
GIMAKKLESPYILGRSDYWIKIKRKNTIDAVIIGYMSGEGVREQHFGSLLLGLYDGSDLI
YIGRVGTGFDSEFLEYFAKRIKKLVVDRLSIKNFEEIEMVRRDVGLIKPYYVAEVEFLEV
TNELKLRAPVFKRLRLDKDPKDCRIDQLRDG
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaagaccagatcacaaaggactggttctataaaaatatagatccaatgctg
gcagttaagggaaaaccattcagcagttctgactatctgtatgagatcaagtgggatgga
acgagatgcatagcgtttgtggatgttgatgaaaaccgcctcaggctgcagaacaggaga
tttctggatataaaatacagatatcctgagttcagatttcacgaacagttttcaaagagt
gttgttctggatggtgaaatagttgtactgcataacggcaggtcggacttcagactcctc
caaaagagggagcaaattgagaacagagcgaagatcaggattctttccagcatgtatcct
gcagtatatgtggtcttcgacattctgtgggatggggaatggattatggatcttccgctg
atagagcgaaagaagatcctgtctgaacttacagatacagcggaaaatctaatgatttcg
gactacattcttggagaagggactgaattttacaaaaaagcaatcgaactcggctttgag
ggcataatggcgaaaaagcttgagagtccgtatatcttggggagaagtgattactggatc
aagattaaaaggaagaataccatagatgcggtgatcataggttatatgagtggtgagggc
gtgagagagcagcattttggctccctgcttctcggtctatatgatgggagtgacctgatc
tacataggcagggttggaacgggattcgattccgagttcttggaatattttgctaagaga
ataaaaaagctggttgttgataggcttagcatcaaaaacttcgaggagatcgaaatggta
aggagggatgtgggactcatcaaaccatactatgtcgccgaagttgaatttctggaagtt
acgaatgaactcaagttaagggctccggttttcaaaaggttaaggctggataaggatccg
aaggattgtagaatagatcagcttagggatggttga
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