Arthrobacter sunyaminii: KG104_05330
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Entry
KG104_05330 CDS
T08124
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asun
Arthrobacter sunyaminii
Pathway
asun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KG104_05330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asun03400
]
KG104_05330 (mfd)
Enzymes [BR:
asun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KG104_05330 (mfd)
DNA repair and recombination proteins [BR:
asun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KG104_05330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
PBP_like_2
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QWQ37188
UniProt:
A0A975S7F0
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All DBs
Position
1213736..1217353
Genome browser
AA seq
1205 aa
AA seq
DB search
MSLNGLRAALAEDPSYARVRTLASRTPERRSDDLQIGAPQGMRAALLAEMVDGLAEAAND
AGTANAASAPPVVLAVTATGREAEDLAAALRSYLPLAGIEEFPSWETLPHERLSPRSDTV
GRRLSVLRRLAHPEGHPIQVIVAPVRAVVQPLVGGLGDLQPVALKVGEERPFNDVVKALS
EAAYARVDMVSHRGEFAVRGGILDVFPPTEDHPIRIDFFGDEVDSMRWFAVADQRTLTGP
HITHPTELYAPPCREILITPSVMRRAAKLQSQMPAAADMLEKIAGGIAVEGMESLAPVLV
DEMVPLMGQLPAGSLSVVIEPEKVRARAHDLAATNEEFLAAAWATASDGGAAPLDLSAGI
SADLEAASFRSLADTRSAALANSVGWWSITSFNPDDETVLDIDTLTINAREPRGYQGDVA
EMMEFIGSRVRDAWRVVVVTEGPGPASRLAELFRDNDIPASLTESLDIEPVPGIISITTA
SAGRGYVFDGLKTGLLTEADLLGRASAYSTRDMRKMPSKRRNAVDPLQLHEGDFVVHEQH
GVGKFVELIQRATGAGQNKTVREYLVLEYAPAKRGGPGDRLFVPTDQLDQITRYVGGETP
VLSKMGGSDWAKTKSRARKAVKEIAGELIRLYSARMASKGHAFAKDTPWQRELEEAFPYV
ETPDQLTTINEVKADMEKEVPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTL
LAQQHMETFGERFSGFPVRVESLSRFQTAKQAKETIEGVKNGSVDVVIGTHRLLSQEVQF
KDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPP
EERHPVLTYVGPYTDRQASAAIRRELMREGQVFFVHNRVSSIDRTAAHLQELVPEARIAV
AHGQMSESKLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDRADHFGLSQLHQLR
GRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLG
GEQSGHIAGVGFDLYIRLVGEAVADYRGEAEEKAAEMKIELPVNAHLPHEYVPGERLRLE
AYRKLASAVTYEAIDEVLAELVDRYGEPPQAVQNLIDVARFRVGAREAGLTDVALQGNFI
KFAPADLPESRVMRLQRMYPGASVKPALNAVLVPKPKTARIGGRDLVDAEILAWAQQVVD
AVFKE
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaacggactgcgcgccgccctggccgaagacccgtcctacgcacgggtgcga
accctcgcctcgcgcacccccgagcgccgcagcgatgacctgcagatcggcgcgccgcag
ggcatgcgtgcggcgctgctggcggaaatggtggacgggctcgccgaagcagccaacgac
gccggaaccgccaacgctgcttccgcgcctccggtggtgctcgccgtgacggccaccggc
cgcgaagccgaggacctggccgcagcgctgcgctcctacctgccgctggccggcatcgag
gagtttccgtcctgggagaccctgccgcatgaacgcctctcgccgcgctcggacaccgtg
ggccggcggctgtccgtcctgcgccgccttgcccatcccgagggccatcccattcaggtg
atcgtggcaccggtgcgcgccgtcgtccagccgctggtcggcgggctcggcgacctgcag
ccggtggcgctgaaggtgggggaggagcggccgttcaacgacgtcgtcaaggccctctcc
gaagccgcctacgcccgggtggacatggtctcgcaccgcggcgagtttgccgtccgcggc
ggcatcctggatgtcttcccgccgaccgaggaccatccgatccgcattgatttcttcggc
gacgaagtggactcgatgcgctggttcgccgtcgccgaccagcgcaccctcaccggcccg
cacatcacccaccccaccgagctgtacgctccgccctgccgcgaaatcctgatcaccccg
tcggtgatgcgtcgcgccgcgaagctgcagtcccagatgcccgccgccgcggacatgctg
gagaagatcgccggcggcatcgccgtcgagggcatggaatccctggctccggtgctggtg
gatgaaatggtgccgctgatgggccagctgcccgccgggtcattgtccgtggtgatcgaa
cccgaaaaggtccgcgcccgcgcccatgacctggcggccaccaacgaggaattcctcgcc
gccgcgtgggccacagcgtccgacggcggcgccgcacctttggatctgtccgccgggatc
agcgcggatctggaggccgcgagcttccgctccctggccgacacccgctccgccgccctg
gccaactcggtgggctggtggtccatcacctccttcaacccggacgatgaaaccgtcctg
gacatcgacaccctgaccatcaacgcccgcgaaccccgcggctaccagggcgacgtggcg
gagatgatggaattcatcggctcccgcgtgcgggacgcctggcgcgttgtcgtcgtcacc
gaaggccccggccccgcctcgcgtctggccgaactgttccgtgacaatgacattccggcc
tccctgaccgaatccctggacatcgaaccggtgccgggcatcatctccatcaccaccgcc
agcgccgggcgcggctacgtctttgacgggctgaagaccgggctgctgaccgaggctgat
ctgcttggccgggccagcgcctactccacccgcgacatgcgcaagatgccctccaagcgg
cgcaacgccgtcgaccccctgcagctgcacgagggcgactttgtggtgcacgagcagcac
ggcgtgggcaagtttgtggagctgatccagcgggccaccggcgccgggcagaacaagacc
gtgcgcgagtacctggtgctcgaatacgcgccggccaagcgcggcggccccggcgaccgg
ctgtttgtgcccacggaccagctggaccagatcacccgctacgtgggcggggaaaccccg
gtgctgtccaagatgggcggctcggactgggccaagaccaagtcccgggcccgcaaggcg
gtcaaggaaattgccggggaactgatccggctctactccgcccggatggcgtccaaggga
cacgcgttcgcgaaggacaccccgtggcagcgcgagctggaagaggccttcccgtacgtg
gaaaccccggaccagctgaccaccatcaacgaggtcaaggcggacatggagaaggaagtc
ccgatggaccgcctggtctccggcgacgtcggctacggcaaaaccgaaattgcggtgcgc
gccgcgttcaaggccgtgcaggacggcaagcaggtggcggtgcttgtgcccaccacgctg
ctggcccagcagcacatggaaaccttcggtgaacgtttctccggcttccccgtgcgggtg
gaatccctgtcccggttccagacggccaagcaggccaaggaaaccatcgagggcgtgaag
aacggctcggtggacgtggtgatcggcacgcaccggctgctgtcccaggaggtccagttc
aaggacctcggcctggtgatcgtggacgaggaacagcgtttcggcgtggagcacaaggaa
gcgctgaagaagatgcgcaccaacgtggacgtcctggcgatgagtgcgacgccgattccg
cgcaccctggaaatgtcgctgaccggcatccgggaaacatccaccctggccaccccgccg
gaggaacggcatccggtgctgacctatgtgggcccgtacacggaccggcaggcctcagcg
gccatccgccgcgagctgatgcgcgaaggccaggtgttcttcgtgcacaaccgggtgtcc
tccatcgaccggaccgccgcgcacctgcaggagctggtcccggaggcgcgcatcgccgtc
gcgcacggacagatgagcgaatccaagctcgagcagatcatcgtggacttctgggagaag
cgttttgacgtgctggtgtgcaccacgatcatcgagaccgggctggacatttccaatgcc
aacaccctcatcgtggaccgggcggaccacttcggcctgtcccagctgcaccagctgcgc
ggacgtgtgggccgcgggcgggaacgcgcgtacgcgtacttcctgtatccctcggagaag
ccgctgggcgaggtggcgctggagcggctcaaggccgtggccacgcacaacgagctcggc
gccggtatgcagctggccatgaaggacctggaaatccgcggcgccggcaacctgctcggc
ggggaacagtccggccacatcgcaggggtgggctttgacctgtacatccggctggtgggc
gaagccgtggcagattaccgcggcgaggccgaggagaaggccgcggaaatgaaaatcgag
ctgccggtcaacgcgcacctgccgcacgagtatgtgccgggggagcggctgcggctggag
gcttaccgcaagctggcctcagcggtgacgtacgaggcgattgacgaggtgctcgccgag
ctggtggaccgctacggcgagcccccgcaggccgtgcagaacctcatcgacgtggcccgt
ttccgggtgggtgcccgcgaggccgggctgaccgatgtggcactgcagggcaacttcatc
aagtttgctccggcggacctgcccgagtcccgcgtgatgaggctgcagcggatgtacccc
ggggcctcggtgaagccggccctgaatgcggtgctggtgcccaagcccaagaccgcccgg
attggcggacgggatttggtggatgccgaaatcctggcctgggcgcagcaggtggtggac
gcggttttcaaggagtga
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