Acetobacter oryzifermentans: WG31_06055
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Entry
WG31_06055 CDS
T04478
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asv
Acetobacter oryzifermentans
Pathway
asv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WG31_06055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asv03400
]
WG31_06055
Enzymes [BR:
asv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WG31_06055
DNA repair and recombination proteins [BR:
asv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WG31_06055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
AAA_16
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANA13636
LinkDB
All DBs
Position
1253456..1256932
Genome browser
AA seq
1158 aa
AA seq
DB search
MTAQTGAQKRIATVWGVPEGYDALLLARRARDHKGPVLHIARNDAAMARLNDMLAFVAPD
VEVLRFPAWDCLPYDRVSPNPSIVAERVSTLTRLLEPAKGRPRLVLATVNAVVQRVAPRK
TFEGQSLSIRTGESLDQGFLIELLIANGYTRTDTVMEAGEFATRGGIFDLYPAGAGEPLR
LDLFGDEVENIRAFDPGSQRSTAKRDGLTLCPVSEFSLDKESISRFRTGWRDAFGPAATS
DPLYEHISDGRRHPGIEHWLPLFHDHLETLFDYLPDVAVSLEHQAEDVLKARLEMIEDHY
QARRQPVREGEIPYRPLPPHLLYLDEKGWDASLARVPVVAFSPYAQPEGAGGVDVGGRPG
KMFSKIVPGAQREQVFTLLGDQVKEWAQVKRCAFVAAWTKGSRERIATLLREHGVPTQTY
ETWEQAHKAKPGPVGLLTLGLERGFVADDLAFVSEQDLLGERIGRPPRRRRRADELIAEA
SELSAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRLLYDGGQKLYLPVENIELLSRFGS
DQAGVALDKLGGTAWQNRKSQMKKRIRDMAGELIRTAAMRALKEAPELVPPEGQWDEFCA
RFPFVETDDQARAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVV
VPTTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKGIADGSVNIVIGTHALLA
KTVQFASLELLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREMSL
IATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVAPRIEDLDRLAERLTAIVPD
ARLIQAHGRLSATELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQ
LYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGFTLASHDLDLRGA
GNLLGDQQSGHVREVGIELYQQMLEDAVADLRSDKNRWAAEDRDWTPNIVMGLPVLIPDE
YVTDLPVRLGLYRRISALASDAELEAMEAELIDRFGSLPPEVKNLLDIVELKRLCRQAGV
ERVEAGPKGMVLQFRNNTFRNPAGLVQWMGKWKDGTVRLRPDHKMAVVRELTNVQRIDLA
RRVLKDLAGMCEKVMEMA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgacagcacaaacaggcgcacaaaagcggatagcaaccgtatggggcgtgccagaaggg
tatgatgcccttttgctggcccgccgtgcgcgggatcataaaggccccgtgctgcatatt
gcgcgtaatgatgcagctatggcccgcctgaatgatatgctggcctttgtagcgcctgat
gtggaagtgctgcgttttcccgcatgggattgcctgccgtatgacagggtttctcccaat
ccttccattgtggctgagcgtgtttccacccttacgcgcttgctggaacccgcaaaaggt
cgcccacggcttgtgctggctacggtgaacgccgtggtgcaacgtgttgccccacgtaaa
acgtttgaggggcaatccctttctatccgcacgggggaaagtctggatcagggctttctg
atcgagttgctgatcgccaatggttacacccgcacggataccgtgatggaagccggggag
tttgcaacccgtggcggtatttttgatttgtatccggccggggcgggtgaacccctgcgg
cttgatctgtttggcgatgaagttgagaacatccgggcgtttgatcccggttcccagcgt
tctaccgctaagcgcgatgggctgacactttgccctgtttccgaattctcattggataag
gaaagcatttcacgcttccgcactggctggcgtgatgcttttggccccgcagcaacgtct
gacccactttatgaacatatttcagacgggcgcaggcatccgggcatcgagcactggctg
cctttgttccatgatcatttagaaacgctgtttgattatctgcccgatgtggctgtttca
ctcgaacatcaggcagaggatgtgcttaaagcccggttggaaatgatagaagatcactat
caggcccgccgccaacctgtgcgggaaggggaaataccttaccgtccgctgcctccacat
ttgctctatctggatgaaaaagggtgggatgccagcttggctcgtgtgcctgtggtggca
tttagcccctatgcacaacccgagggcgccggaggtgtggatgtaggtggccgcccgggc
aagatgttctccaaaattgtacccggtgcccagcgtgagcaggtgtttacgctcttgggg
gatcaggtaaaggaatgggcgcaggttaagcgctgcgcttttgtagccgcatggaccaaa
ggctcgcgcgagcgcattgccacattactgcgagagcacggcgtacccacccaaacatat
gagacatgggagcaagcccacaaagccaaacccggcccggttggtttgctgacccttggt
ttggaacgcggctttgttgcggatgatctggcgtttgtttctgaacaggatctgttgggt
gaacgtattggtcgtccaccgcgccgtcgccgtcgtgctgatgaactgattgccgaagcc
agtgaactttcagccggtgatctggtggtgcatcaggattacgggataggccgttatgat
gggctggaaacagtaagtgtaggcgtagccccgcatgattgcttgcgcctgctgtatgat
ggcggacagaaactctacctgcctgtagagaacattgaactgcttagccgctttggatca
gaccaagctggtgttgcgctggataagctgggcggcacggcatggcagaaccgtaaatcg
caaatgaaaaagcgcatccgcgatatggcgggtgagcttatcagaaccgccgccatgcgg
gcgttgaaggaagcgccagaactggttccgccggaggggcagtgggatgagttctgtgcc
cgcttcccatttgtagaaacggatgatcaggcacgcgctattgctgatgtgctggaagat
atgtcctccggccgaccaatggatcggctggtgtgtggtgatgtcggctttggtaaaacc
gaggtagcattgcgcgcggcgtttgtggcggccatgtctggcggacaagtggctgttgtg
gtgcccaccactttgttggcgcggcagcattatcgcacctttgccgcacggtttgagggc
tttcccatcaaggtggcgcaactttcccgcatggtaacgggtaaggaagcaacagcagtg
cgtaagggcattgcagatggcagcgtgaacattgttatcggtacgcatgcactgctggcc
aaaacggttcagtttgcctcgctcgaactgctgattattgatgaagaacagcactttggc
gtgtctcataaggaaaagctgaaagccctgcgtgaagatgtgcatgtgcttacactttcc
gccacaccattgccgcgtacgctccaactctcgctttccggcgtgagggaaatgagcctg
attgccaccccaccaacagacaggctggcggtgcgcactttcatcatgccgtttgatagc
gtggtgataagggaggccatccagcgcgaacgcttccgtggtgggcagattttctgcgtg
gccccgcgtattgaggatctggacaggctggccgaacggcttacggccattgtgcccgat
gctaggctgatacaggcacatggccgcctttccgccaccgaactggaacgggtgatgacc
gagttttcagacggtaaatacgatattctgctctccaccaatattgtggaaagtgggctg
gatatgcccgcagtgaatacgctgattatccatagggcggatatgtttggccttgggcag
ctttaccagctgcgcgggcgtgtggggcgtggcaagcaacgaggttatgcttacctcaca
tggcctcaaacacatgtgctttcagcttctgcggaaaagcggctggaagtaatgcaaacg
ctggatacgctgggtgctggctttacgctggcctcgcacgatctggatttgcgtggcgcg
ggtaatttgctgggcgatcaacaatccggccatgtgcgtgaagtagggatcgaactgtac
cagcagatgctggaagatgccgtggccgatctgcgctcagataaaaatcgttgggccgca
gaagatcgggattggacgcccaatattgtcatgggtctgcccgtattgatccctgatgaa
tatgtaacagatttgcccgtccggcttgggctctaccgccgtatcagcgcgctggcatct
gatgcggagctggaagccatggaagccgagctgatagatcgctttggttctctgccgccg
gaggtaaaaaaccttctggatattgtagagcttaagcgcctgtgccgtcaggccggggta
gagcgtgtagaggctggccctaaaggcatggtgctgcaattccgtaacaataccttccgc
aacccggcagggttggtgcagtggatggggaaatggaaggatggcacagtccgcctacgc
ccagaccataaaatggcggttgtgcgcgaactgacgaacgtgcagcgcatagatctggcc
cggcgtgttttgaaagacctggctggtatgtgcgaaaaagtaatggaaatggcctaa
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