Acetobacter senegalensis: ASN_3756
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Entry
ASN_3756 CDS
T04217
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asz
Acetobacter senegalensis
Pathway
asz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASN_3756 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asz03400
]
ASN_3756 (mfd)
Enzymes [BR:
asz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASN_3756 (mfd)
DNA repair and recombination proteins [BR:
asz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASN_3756 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
RecG_dom3_C
UB2H
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
CEF42971
UniProt:
A0A0U5EYY0
LinkDB
All DBs
Position
I:complement(3812268..3815750)
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AA seq
1160 aa
AA seq
DB search
MTAEASVEDRIASIWGVAEGYDAFLLARRAREHKGPVLHIARDDASTARLADLLAYMGAD
VETLRFPAWDCLPYDRVSPNPTIVAERVATLTRLLEPANGKPRLILTTVAAVVQRVAPRS
TFKGQSLTIRQGESLDQEFLIELLVANGYTRTDTVMEAGEFASRGGIFDLYPAGAAEPVR
LDLFGDEVENIRAFDPGSQRSTSRLQELTLRPVSEFSLDPESISRFRTGWRDVFGPGAAA
DPLYEHVSDGRRYPGLEHWLPLFHTEMETVFDYLPGVSISLDYQAEEVLKTRLEMIDDHY
QARRQPPREGETPYRALPPHLLYLDSKGWNAILSRLPVVAFSPYAKPDGARGMDVGGRPG
KMFAKIVPNAEREKVFTLLGEQVRDWGQVNRRAYVTAWSKGSRERIGTLLREHGVVTQSY
ENWEQAKKAKPGSVGLLTLGLERGFVAEDMAFVSEQDLLGERIGRPPRRRRRADELIAEA
GEITAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRLLYDGNEKLYLPVENIELLSRFGS
DQAGVPLDKLGGVAWQGRKARMKQRIRDMASDLIKTAAARALKEAPVLAPAEGLWDEFCA
RFPFVETDDQARAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVV
VPTTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKDATAVRKGLADGSINVVIGTHALLA
KTVQFAALELLIIDEEQHFGVAHKEKLKALRDDVHVLTLSATPLPRTLQLSLSGVREMSL
IATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVAPRIEDLDRLAERLTAIVPD
AKLIQAHGRLTPTELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQ
LYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGFTLASHDLDLRGA
GNLLGDQQSGHVREVGIELYQQMLEDAVADLRADASRRRAEDRDWTPNIIVGLPVLIPVD
YVPDLPVRLGLYRRISGLASDAELEAMEAELVDRFGAVPPEVKNLLDIVDLKRLCRAAGI
ERLEAGPKGMVLQFRQNSFKNPAGLVQWMGRWKDGAVRLRPDHKLAVVRELTNVQRIDLA
RRVLRDLVKLVERAPVAERA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagaagcgagtgtcgaggaccgcatagcctccatatggggtgttgcggagggg
tatgatgccttcctgctggcgcgcagagcgcgtgagcacaagggaccggtgctgcatatt
gcccgggatgatgcctctaccgcacggttggcagatttgctggcctatatgggggctgat
gttgagacacttcgctttcccgcctgggattgcctgccgtatgatcgggtttctcccaac
ccgaccattgtggccgaacgtgtggcgactctcacccggcttctggagccagccaatggc
aagccgcgcctgattctgacaacggtggcggcggttgtgcagcgtgtggctccccgcagc
acgtttaaaggccagtccctgaccattcggcagggagaaagccttgatcaggaatttctg
atcgaacttctggtggccaatggctatacccgtacagatacggtgatggaagcgggtgaa
tttgccagccgtggggggatttttgatctttatcccgccggggcagcagaacctgtgcga
ctggatctgttcggtgatgaagttgaaaatatccgggcctttgatccgggtagccagcgg
tctacatcgcgcctgcaggaactgaccctgcggcccgtttccgagttttcgctcgatccc
gaaagtatctcccgtttccgcacgggctggcgggacgtgtttgggcctggcgccgcagcg
gacccgctttatgaacatgtaagcgacggccgccggtatccggggctggaacactggttg
ccgctttttcataccgagatggaaacggtatttgactatctgcccggcgtgtcgatctcg
ctcgattatcaggcggaagaggtgctcaaaacccggctggaaatgattgacgaccactat
caggcgcgtcgtcagccgccgcgggagggagaaacgccatatcgggctctgccgccgcat
cttctgtatctggattccaaaggatggaatgccatcctcagccggctgccggttgtggcg
ttcagtccctatgccaagcccgatggggcccgcggtatggatgtgggcggacgccccggc
aagatgttcgccaagatcgtgcccaacgccgagcgtgaaaaggttttcaccctgctgggc
gagcaggtgcgggattgggggcaggtcaatcgccgcgcgtatgtgacagcgtggagcaag
ggctcacgcgagcgcattggcaccctgctgcgcgaacacggggtagtgacccagagctat
gagaactgggagcaggcgaaaaaggccaagcccggttctgttggcttgctgacgctgggt
ctggaacgcggctttgttgcggaggacatggcgtttgtttctgagcaggatctgcttggg
gagcgtattggccgcccaccacgccgccgtcgccgtgctgatgaactgattgccgaggcc
ggagaaattacggcgggcgatctggtggtgcatcaggattacggcattggccggtatgat
gggctggaaaccgtcagtgttggcgtggcgccgcatgactgccttcgcttgttgtatgac
gggaatgaaaagctttacctgccggttgaaaacattgaattgctgagccgctttggctcg
gatcaggccggtgtgccgctggataagctgggcggtgttgcgtggcagggccgtaaggcc
cggatgaaacagcgcatccgcgatatggcgtccgacctgatcaagacggctgcggcccgt
gcattgaaggaagcaccagtgctggccccggctgagggcttgtgggatgaattctgcgct
cgtttcccgtttgtggaaacggatgatcaggcccgcgccattgctgatgtgcttgaggat
atgggttcaggccgcccgatggatcggcttgtgtgcggggatgtaggcttcggcaagacg
gaagttgcgctgcgggctgcgtttgttgccgccatgtctggcgggcaggtggccgtggtg
gtgccgaccactttgctggcgcgccagcactaccgcacttttgctgcccggtttgagggc
tttcccatcaaggtagcccagctttcccgcatggtaacgggcaaggatgccacagccgtg
cgcaaagggctggctgatgggtccatcaatgtggtgatcggcacgcacgcattgctggcc
aagacggtccagttcgcggcccttgaactgctgattattgatgaagaacagcattttggt
gtggcgcataaggaaaaactgaaagcgctgcgcgatgatgtgcatgtgctcacgctttct
gccacgccgttgcccagaacgttgcagctttctctctccggtgtgcgggagatgagcctg
attgccacgccgccaacggaccggctggcagtaaggacattcatcatgccgtttgacagc
gtggtgattcgggaggccattcaacgtgaacgcttccggggtgggcagattttctgtgtg
gccccgcgtattgaagatctggaccggctggcggaacggctgacggccattgtgccggac
gccaagctgattcaggcgcacggcaggctcactcccacagaacttgaacgggttatgacc
gagttttctgacgggaaatatgacatcctgctctccaccaacattgtggaaagcgggctg
gatatgcctgcggtgaacacgctgatcatccatcgggctgacatgttcgggctggggcag
ttgtatcagctacgcgggcgcgttggccgtggaaagcagcgcggttacgcctacctgaca
tggccgcaaacccatgttctctcggcctcagccgaaaagcggctggaagtcatgcagact
ctggatacgctgggcgctggctttacgctggcgtctcacgatcttgatctgcgcggggcg
ggtaacctgctgggagatcagcagtctggccatgtgcgcgaagttggcattgaactgtat
cagcagatgctggaagacgccgtggcagatctgcgtgcggacgccagccgtcgacgtgcc
gaggaccgagactggacccccaacatcattgtcggtttgcctgtacttattcccgttgat
tatgtgccggacctgccggtgcggctgggactgtataggcgcatcagcgggcttgcttcc
gatgcagagctggaagccatggaagccgaactggtggatcgctttggcgcagtgccgcca
gaggtgaaaaaccttctggatattgttgatcttaaaagattgtgtcgggctgcgggcatt
gagcgtctggaagctgggccaaaaggaatggtgcttcagttccgtcagaatagcttcaag
aaccccgctgggctggtgcaatggatgggccgctggaaagacggtgccgtcagattacgg
cctgaccacaaactggcggtggtgcgcgaattgacgaatgtgcagcgtattgatctggcc
cgccgggtattgcgtgatctggtcaagctggtggagagagcacctgtagcagagagggct
tga
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