Agrobacterium tumefaciens S33: AWN88_04490
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Entry
AWN88_04490 CDS
T04213
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AWN88_04490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_04490
Enzymes [BR:
ata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AWN88_04490
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AWN88_04490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMD57506
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All DBs
Position
circular:1006343..1008994
Genome browser
AA seq
883 aa
AA seq
DB search
MANDKLSTYRQKRDFQKTQEPSGKTKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLYPQDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNRTPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDREGGKRTNWLLIKHRDDFSVEENGDAILDEK
NTSVASGRTMAAIAAGKGKKPKPFMVQSGDVQADAVWDSNHGLAADKRAADTKKRRPAAR
TAAKSAMPDFIPPQLCETLDRPPSADGWIHEIKFDGYRIQARIENGEVTLKTRKGLDWTA
KYPAIATSAASLPDAIIDGEICALDENGAPDFAALQAALSEGKTDALVYFAFDLLCEGSE
DLRQLPLTERKKRLEALLSEAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADAP
YQSGRTDTWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFRDDHFVYVGRVGTGYGAKTV
DTILPKLRELETSKSPFTGIGAPKKEPNIVWVKPELVAEIQFAGWTADGLVRQAAFKGLR
QDKPAKEVEAEKPASPGKTDTPTPAATKPSSPARGKNAKAEVMGVMISSPDKPLWPDAND
GEPVTKEDLAHFHEAVGLWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVK
VFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPNEPEVPGRLVFDLDPGPDVPFSTVV
EAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGFAHDVCLQMARD
NPDLYLIKMSKNQRNGRIFLDYLRNDRMATAVAPLSPRARPGAPVSMPLTWKQVKADLDP
KRFTIRTVPALLSKTTAWEDYCDGQRSLEQAIKRLTKSMKQAA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgacaagctttcgacctacaggcagaaacgcgattttcagaagacgcaggag
ccaagcggaaaaacgaagctgaaagcttcaaaccgcaggcgctttgtcatccagaaacat
gacgccacgcggctccattatgacctgcgcctcgaactcgacggcgtcttcaagtcctgg
gctgtgaccaagggaccgtctctctatccccaggacaagcgcctggccgtggaggtggaa
gaccacccgctggactatggtgacttcgaaggcacgattcccaaaggccagtatggcggc
ggcacggtcatgctctgggaccgcggctactgggagccggaaggcaacaggacgcccgag
caggctctcgccaagggcgacttcaagtttacccttgaaggagagcggctgcatggcagc
ttcgtgctggtgcggatgcgcaacgaccgtgagggtggcaagcggacgaactggctgctg
atcaagcatcgcgacgacttctcggtcgaagaaaacggcgacgccatccttgacgaaaaa
aacacgtcggttgcctcgggcagaaccatggccgccatcgccgcaggtaaaggaaagaaa
ccaaaaccgttcatggtgcagagcggcgatgtgcaggccgacgctgtctgggacagcaat
cacggactggcggcagacaaacgtgcggcggatacgaagaaaaggcgcccggcagcgcgg
acagcagcgaagtccgcgatgcccgatttcatacctccgcagctttgcgaaacgctcgac
cgcccaccctcggccgatggctggatccacgagatcaaattcgacggataccgtattcag
gcgcgcattgaaaatggcgaagtcacgctgaagacgcgcaaggggctggactggacggcc
aagtatccggcgattgcgacatcggccgcaagcttgcctgatgccatcatcgacggtgag
atctgtgcactcgatgaaaacggtgccccagacttcgccgcacttcaggcggcgctgtca
gaaggtaaaacggatgcgctcgtctattttgcttttgacctgctgtgcgaggggagtgag
gatctaaggcaactgccgcttacggaacgcaagaaaaggctcgaagcgcttctgagcgag
gcgggggaagatccgcgcctgcggttcgtcgaacactttgagaccggcggcgatgcagta
ttgaaatcggcctgcaagctctcgctggagggcattgtctcgaagcaggcggatgccccc
tatcagtcggggcgcaccgatacctgggcgaaatccaaatgccgcgccggacatgaggtt
gtcattggcgcttacgcgaaaaccaacggcaagtttcgttcacttcttgtcggcgtcttc
agggacgatcacttcgtctatgtcgggcgggtcgggaccggctatggtgccaaaacggtg
gatacaatcctgccgaagctccgggaactggaaacctcaaagtcgccctttaccggaata
ggcgctccgaaaaaggaacccaacatcgtctgggtcaagcccgaactggtggccgagatc
cagttcgccggctggaccgcggacggacttgtccgtcaggcagccttcaagggtttgcgc
caagacaagccggcgaaggaggtcgaggccgaaaagccggcatcgccgggaaagaccgat
accccgacgccggccgcgacaaagccatcgagtcccgcgcgcggcaagaacgccaaggcc
gaggtgatgggcgtgatgatctccagccctgacaagccgctctggcccgatgcaaatgac
ggtgagccggtcaccaaggaggatctcgcgcactttcatgaggccgttggtctatggctg
atcgaccatatcaagggacggccatgctccatcatccggacgcctgacggcatcggtggt
gagcagttcttccagagacacgcgatgccgggaacgtcgaacctgctcgagctggtcaag
gtgttcggcgacaagaaaccctatctgcagattgatcgcgttgagggccttgccgccatc
gcccagatcggcggcgtcgaactgcatccctggaattgcgagcccaacgaaccggaggtg
cccggtcgtcttgtcttcgaccttgatccgggtccggacgtacccttctccaccgtggtc
gaagccgcccgggaaatgcgcgaccggctggaggaacttggcctcgtcagcttctgcaag
accaccggcggcaagggccttcacgtcgtcaccccgcttgcggtaccgaagggaaagaag
ctgagctggccggaggcgaaaggcttcgcacacgatgtctgcctgcagatggcacgtgac
aaccctgacctttacctgatcaagatgtcgaagaaccagcgcaacggccggatcttcctc
gactacctgcgcaatgaccgaatggcgactgctgttgcgccgctgtcaccgcgcgcccgg
ccaggcgcgccagtatcgatgccactgacctggaagcaggtaaaagcggatctcgatccg
aaacgcttcaccattcgcaccgtaccggcgcttttgtcgaagacaaccgcctgggaggat
tactgcgacgggcagcgttcgctggagcaggccatcaagcggctgacgaagtcaatgaaa
caggccgcctga
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