Agrobacterium tumefaciens S33: AWN88_16600
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Entry
AWN88_16600 CDS
T04213
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWN88_16600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ata03019
]
AWN88_16600
Enzymes [BR:
ata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWN88_16600
Messenger RNA biogenesis [BR:
ata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWN88_16600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_19
CMS1
Flavi_DEAD
AAA_22
UTP25
Snf7
Motif
Other DBs
NCBI-ProteinID:
AMD61546
LinkDB
All DBs
Position
linear:1101690..1103162
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AA seq
490 aa
AA seq
DB search
MTSFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPI
IEMLMKQADRPANRTCRTLILAPTRELVNQIGENLRAFVKKTPLRINQVVGGASINKQQL
QLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISKMVPAK
RQTLLFSATMPKAIADLAHSYLTDPLKVEVTPPGKAADKVEQYVHFVAGKNDKTELLKKS
LNENPDGRAIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVL
VATDVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHD
IEKLMKIDIPVASGERPAGLASPTRPNNNRGGRNNNGGQQRGPREGGRHNGESRPSRHHA
PRDADNDLEVTSDFKRVKQAEGDAGRPAGPRKHRRPARKPGGSGANRHAPAGGNGQEKRA
SGNGHRGRNR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgaccagttttagcgaactcggcctctccgaaaagattgttgccagcgttacccagctt
ggctacacgaccccgacccccattcaggcaaaagccattccgctgctgctcgaaggccgc
gacctgatcggcctcgcacagaccggaaccggcaagaccgccgctttcggcctgccgatc
atcgaaatgctgatgaagcaggcggaccgcccggcaaaccgcacctgccgcacgctcatc
cttgccccgacccgcgagctggtgaaccagatcggcgaaaacctgcgcgctttcgtgaag
aagacgccgctgcgcatcaaccaggtggttggcggcgcatcgatcaacaagcagcagctc
cagctcgaaaagggcacggacattctggtggcaacccccggccgcctgcttgacctcatc
gcccgcaacgccatctcgctctccaaggtcacctatctggtgctggacgaagcagaccag
atgctcgatctcggcttcatccacgatctgcgcaagatctcgaagatggtgcccgccaag
cgccagacgctgctcttctccgccaccatgccgaaggcgatcgccgatctggcccacagc
tacctgaccgatccgctgaaggtcgaagtgaccccgcccggcaaggcagccgacaaggtg
gagcaatatgtccacttcgtcgccggcaagaacgacaagaccgagcttctgaagaagtcg
ctcaacgagaacccggatggccgcgccatcgtgttcctgcgcacaaagcacggtgcggag
aagctctacaagcatctcgaacatatcggcttcaaggtcgcctccatccacggcaacaag
agccagggccagcgcgagcgcgccctgaagggcttcaaggacggcgagatcaaggttctg
gtcgcaaccgacgtcgcggcccgcggcatcgatatcccggccgtgacgcacgtcttcaac
tacgacctgccggaagtaccggacgcttatgtccaccgcatcggccgtaccgcccgtgcc
ggccgcgacggcatcgccattgctttctgcgcaccggacgagacccgcctgttgcacgac
atcgaaaagctgatgaagatcgatattccggttgcttctggtgaacgcccggccggtctt
gccagcccgacgcgccccaacaacaaccgcggcggacgaaataacaatggcggccagcag
cgcggcccgcgcgaaggcggacgccacaatggcgaatcccgcccgtctcgccaccacgcg
ccgcgcgatgcggacaatgatcttgaagtcacatccgacttcaagcgcgtgaagcaggcc
gaaggcgacgctggccgcccggctggcccgcgcaagcatcgtcgtccggcccgcaagccc
ggcggcagcggcgccaaccgccacgcccctgccggcggcaacggccaggaaaaacgcgct
tccggtaacggccatcgcggccgcaaccgttaa
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