Atopobium sp. oral taxon 416: J4859_08075
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Entry
J4859_08075 CDS
T07170
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
atb
Atopobium sp. oral taxon 416
Pathway
atb03410
Base excision repair
atb03430
Mismatch repair
atb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
J4859_08075 (recJ)
03430 Mismatch repair
J4859_08075 (recJ)
03440 Homologous recombination
J4859_08075 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atb03400
]
J4859_08075 (recJ)
DNA repair and recombination proteins [BR:
atb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
J4859_08075 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
J4859_08075 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4859_08075 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecJ_OB
DHH
DHHA1
ResIII
AAA_22
SWI2_SNF2
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QUC02027
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All DBs
Position
1515064..1518666
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AA seq
1200 aa
AA seq
DB search
MAGLNGSKHWEVLSQDQKSQQKLTQELKLPSLVTRTLVARGYTTPEAAKRFLTPSLERDW
EDPALIPGLEEVADLVEQALKNNEHIAIFGDFDVDGMSATCLLTLGLRALGAEVYPFIPN
RFGEGYGLSHEALQRLMKATTPDLIITVDNGIAAAQKVEALKAEGIDVAITDHHEPGDEV
PNGVPVADPKLSEGCPSRDLAGAGVALKLVQMLGERVGKPELWRHYTMLATLGTISDMMD
LSPENRALVADGIKRLPETDRPGIVALAEQCKVPLTELTADDLPFTLIPRLNAAGRMGAP
DTAFQLLLTDDPAEATKLAEQIEQINQDRRQIEAQLTDEALEKVKETYHGERIIVVGGEG
WHEGVKGIVASRLTARYHVPTILFTIQDGVALGSGRSVGSVDLFHAVEQCADMLIRFGGH
AGAVGVTLDASRFDEFRSRMQKIMDALPEDQFEDEGEITAVIRLSEANQAGIEALEMLQP
FGMGNKRPLFAARGVTMKARARVGNNGDHLRFVATDGTNSIPAIMFHAPHVEELACYEGA
VDLVFDAINETWQGRTKPKLMVKDIVVRIPKAPVGLTEAQQKLQGIQKHAGMILVRPTVA
VSGAETFVTKLYTRNIQAASVALDSGELLQVVDNHSKKLEVVTDDGQVAGHLHESITSML
VSRMHKGAQFQAQVKGISHDEKKTVRVQIAPRVRTQAVDIRKQLEALSEEKLTQALVHTA
IGDNELLPAQKQALEMLSRGQSALCVIATGRGKSLIFTVHAARLALKQHRASVFVYPLRA
LVNDQFYHLDEELGKLGIGIAVLSGATPTKQRRHIFEQLQAGSLDIILTTPEFLALHSKG
FCRSHRIGFVVVDEAHHMQEAKSGQRSAYGDFPKILTSFGHPTCLATTATAPDPVAKEIA
KLLSLERKQILIDKTARTNFTIQDLRETREKKAALVNIVASGQKSVVYVNSRDQTVQLVR
YLRHAISDLAGQIAYYNAGLLRGERTQVEQAFRKGDLTCIVATSAFGEGVNIPDIRHVVL
YHLPFSEVEFNQMCGRAGRDGKPAEIDLLFSTRDARLNDQIIAAETPERSDLVDLYKVLL
GQWRATGGEPIEASDEELLYQVRLINQKTRLTSQGIAAGLGIFQEFGFLDVRGFVENRHI
LMTEAPRHTDLSCSVRLQEGMRAREDFVSFRDRILTAPAQELLYKLCRPIVPHMGCVVDG
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggcaggattaaacggcagcaaacactgggaggtcctctcccaggatcaaaaaagtcaa
cagaagcttacacaggagctcaagcttccgtcgctcgtaacccgcacgcttgtggcgcgc
gggtacaccactcctgaggccgcaaagcggtttctgaccccctcactggaacgggactgg
gaggatcctgccctgatcccgggactcgaggaggtcgcagacctggtggagcaggcactt
aaaaataacgaacacatcgcgatctttggcgacttcgacgtcgatgggatgagtgccacc
tgccttctaacgctagggctgcgtgcgcttggcgccgaggtctaccccttcatcccaaac
cggttcggagaggggtatgggctttcccatgaggcgctgcagcggctgatgaaagccaca
acgccggatctgatcatcacggtcgataacgggatcgccgccgcgcagaaggtagaagcc
ctgaaagctgaggggatcgatgtcgcaatcaccgatcaccatgagccgggtgatgaggta
ccgaacggtgtgcccgtcgcagatcccaaactctcagagggctgcccttcacgggatctg
gcgggagccggcgtagccctgaaactcgtacagatgctgggggagcgtgtcgggaaaccg
gagctgtggcgtcactacacgatgcttgcgaccttaggtactatctccgatatgatggac
ctctcgcctgaaaaccgggcattggtcgcagatggaatcaagcgtcttcctgagaccgac
cgtccgggcattgtcgcactcgcagagcagtgcaaagtgccgctcacggagctcaccgca
gacgacctgcccttcaccctgatcccgcgcctcaacgcggcgggacgtatgggggcaccg
gataccgccttccagctgttgctcaccgatgatccggcggaagccaccaaactggcggag
cagattgagcagatcaaccaggaccggcggcagatcgaggcacagctgaccgacgaggcg
ctcgaaaaggtcaaggagacctaccacggggagcgcattatcgtcgtcgggggagaaggc
tggcacgaaggtgtcaaaggcatcgtggcttcccgtttgaccgcccgctaccatgtgcct
acgatcctcttcacgatccaggatggggtagccctgggctcaggccgttcggtcggcagc
gtggacctgtttcacgcggttgaacagtgcgcggacatgctgatccgcttcggcgggcat
gccggcgcggtcggcgtaacgctggatgcctcacggttcgacgaattccgcagtcgcatg
caaaagatcatggacgccctgcctgaagaccaatttgaagacgagggcgaaatcactgcc
gtcattcgcctctctgaggcgaaccaggccggcatcgaagccttggagatgctccagccg
ttcggtatgggaaacaagcggcccctcttcgcggcgcggggcgtgacaatgaaggcgaga
gcccgcgtcggcaacaatggggaccacctgaggtttgtagcgaccgacgggaccaactcg
atacctgccatcatgttccacgcgccccacgtcgaagagttggcgtgctatgagggagcg
gtggatctggtcttcgacgcgatcaacgagacctggcagggccggacgaagccgaaactg
atggtgaaagacattgtcgtccgcatcccgaaagcgcctgtagggctcactgaagcgcag
cagaaactgcaggggatccagaaacatgctggtatgattctcgtgcgtccgacagtcgcg
gtatcgggcgccgaaacctttgtgacgaagctctataccagaaatattcaggcggcctcg
gtagccttggactcaggcgagctcttgcaggtcgtcgacaaccacagcaagaagttggag
gttgtcaccgacgacgggcaagtcgccgggcacctccatgaatcgattacctcgatgctc
gtatcccggatgcataagggagcacagttccaggcgcaggtgaaggggatcagccacgac
gaaaagaagactgtccgcgtgcagattgcaccgcgcgtccggacacaggctgtggatata
cgcaaacagcttgaagccctctcagaggagaagttgactcaagcgctcgtccacaccgca
atcggggataacgaactgctgccggcccagaagcaggcgcttgagatgctctcgcgaggg
cagtccgcgctgtgcgtgatagctaccggcagaggtaagagcctgatttttactgtgcat
gctgcacggctcgcgctcaagcagcacagagcttcagtctttgtatatccgctgcgggcg
ctcgtcaacgatcagttctaccacctcgacgaggaactgggaaagctcgggatcggcatt
gcagtcctgagtggcgcgacccccacaaagcagcgcagacatatctttgagcagctgcag
gctggctccctcgatatcatcctcacgaccccagagttcttagccctacacagtaagggc
ttctgccgctcacaccgcatcggctttgtcgtggtggatgaggcgcaccatatgcaggag
gccaaatcaggccagcgcagcgcctatggggacttcccgaagatcctcacgagctttggg
catccgacctgcctggcgacgaccgctacagcgcctgacccggtggccaaggagatcgcg
aagctgctttcactcgaacgcaaacagattctgatcgacaagaccgcccgcaccaacttc
accattcaagatctcagggagacccgggagaagaaagcggctctcgtcaatatcgtggca
agcggccagaagagcgttgtctatgtgaactcgcgcgaccagactgtccaattggtccgc
tatctgcgtcacgctatttctgacctcgccggtcagattgcctactacaacgcaggtctg
ctgcgtggggagcgcacgcaggtggaacaggccttccgtaagggggatctcacctgcatc
gtggcgacctctgccttcggtgagggtgtcaatatcccggatatccgccacgtggtgctc
taccacctgcccttctctgaggtggaattcaaccagatgtgcgggcgtgccggccgcgac
gggaaacctgcggagatcgacctgctgttctcgacccgcgatgcgcgcctgaacgatcag
atcatcgctgcagagaccccggaacgctctgatctcgtcgacctttacaaggtcctgttg
ggccagtggcgcgccaccggtggagagccgattgaggcaagcgatgaagagctcctgtat
caggtacgcctcatcaaccaaaaaacacgccttaccagtcagggaattgccgccgggttg
ggtatatttcaagagttcggattcttggatgtgaggggttttgtcgagaatcgtcatata
ctcatgacagaggcccccagacacaccgatctttcctgctcggtccgtctgcaggagggg
atgcgtgcgcgggaagactttgtctcattcagggacagaatactgacggctcctgcacag
gagctgctctataagctctgtcgccccattgttccgcatatgggatgcgtggtcgacgga
taa
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