Caldicellulosiruptor bescii: Athe_0638
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Entry
Athe_0638 CDS
T00857
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ate
Caldicellulosiruptor bescii
Pathway
ate03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ate00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Athe_0638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ate03400
]
Athe_0638
Enzymes [BR:
ate01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Athe_0638
DNA repair and recombination proteins [BR:
ate03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Athe_0638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ACM59762
UniProt:
B9MPK1
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All DBs
Position
721394..724819
Genome browser
AA seq
1141 aa
AA seq
DB search
MLKVLERLDSFKTLEEIVAKKSLPVVVTGVGEMGKALVVKYLCEKFNKKALFITTQRAKL
EWERRFKNLFSSVVNLQERENPYVVSFAKSRDSEITRIEQFVKIFEDGFDVLILTAQNLF
EKYTDLKLDCILLTEGLDIQLETLIGKLLTFGYERVKTVEKKGQFSQKGGIVDIYPVAST
YPVRIEFFGDTIDTIRLFDVETQKSFEKKDSIKIYKAIEWDLQEDFSEGLKHIKDDYKKT
KSKLKEESRKNLEETFKEVIEGIRLDVERLYPYYYQQFLSVIDIFSECLIFVDEYSQVYN
SLKAFEQETQEIFSDLLEKGFVLPKMAECYFTTSEVLEKLSRSIILQTFVSAIKELELKD
IISFNFLRELPSYNGQKEVLIDDLKYYMSKRYTINIFTGSRTSLEDLADALLKEDIQFSE
AEEPEVERTGVYLIARSIEKGIEVQDLKLVYLSFFHLEKKKENETKKRIKSKKDAFYTIE
DLKPGDFVVHRTHGIGKFLGFEKITVEGTTKEYVKLEYANSSYLYVPTTNLDVIEKYIGT
DDVQPKLSKLGSQEWQKQKQKVRKSLEIVAKDLVELYAKRQLGKGFKFSKDTLWQKEFEE
KFPYTETEGQLQAIEEIKRDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVL
VPTTILAQQHYMTFSARMKDFPVTIEVLSRLKSETQQKKIVRGLREGTIDIVIGTHRLLS
SDVKFKDLGLLIIDEEHKFGVEAKEKIKKLKTNVDVLTLTATPIPRTLNMALLGIRDLSV
IEDPPEDRFPVQTFVLEYNERIIKEAILREISRGGQVFYLYNRIKDIQEVAAKLQNLVDD
SIKVACAHGQMPEEELERVLLDFIEGRYNVLVCTTIIESGVDMPNVNTLIVEDSDRLGLA
QLYQLRGRVGRSSRLAYAYFTFRKDKVLSEQAQKRLAAIKEFTELGAGFKIAMRDLEIRG
AGSLLGKLQHGHINSVGYDMYIRLLSEEIRRLKGENIQPEIEPQIDVKVSAFISSSYIDD
EKERINMYKKISSIESKDDVNDIYDELIDRFGDVPKEVDNLIKVAYLKCLCKKAGIISIL
QFQESLFKLQFLNKEMLEAAKMKFLRKGLSYLQNRDDMLQLLIANNWFDTLIAILEDLQE
N
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaaggttttagaaaggcttgatagttttaaaactcttgaagagattgttgccaaa
aaaagccttcctgttgttgtcacaggcgttggtgagatggggaaagcgcttgtagtcaag
tatttatgtgaaaaatttaacaaaaaggcgttgtttataacaactcaaagagcaaaactt
gagtgggaaagaaggtttaaaaacctttttagtagtgtagtgaacctgcaggaaagagaa
aatccgtatgttgtatcttttgcaaagagtagggattctgaaattaccagaatagagcag
tttgtaaagatttttgaggatggttttgatgttctcatattaactgcccagaaccttttt
gaaaagtacacagatttgaagcttgattgcattcttctcacagaaggtcttgacattcag
cttgaaacccttataggaaagcttttaacattcgggtatgaaagagtaaaaactgtggaa
aagaaaggacagttttctcaaaaaggtggcatagttgatatatatcctgtggcaagcaca
tatcctgtgaggattgagttttttggagataccatagatacaattagactttttgatgtt
gaaacccaaaaatcttttgaaaaaaaagatagtattaaaatttacaaggcaattgagtgg
gatttacaagaagacttttcagagggcttaaaacatataaaagatgactacaaaaaaacg
aaatctaagctgaaagaagagagcagaaagaatttagaagagactttcaaagaagtgata
gaaggaattcggctggatgttgaaaggctgtatccatattactatcagcaatttttatca
gttattgatatttttagtgaatgtcttatttttgttgacgagtatagtcaagtctacaat
agcttgaaagctttcgaacaagagacacaagagatcttttcagaccttttagaaaaagga
tttgtgcttccaaaaatggcagagtgttattttaccacgagcgaagttttagaaaagctt
tcgaggtcgataattcttcaaacatttgtctcagctataaaggagcttgaactcaaagat
atcatttctttcaattttttaagggagcttccttcttataatgggcagaaggaagtttta
atagacgatttgaagtattacatgtccaaaagatataccataaacatctttacaggaagt
cgaacatcacttgaggacttggcagatgcacttttaaaagaagatatacagttttctgag
gctgaagaaccagaagtagaaagaacgggagtgtatttaatagcccggtctattgaaaag
ggtattgaagtgcaagatctcaaattggtttatctttcgtttttccaccttgaaaagaag
aaggaaaatgagacaaaaaagaggataaaatctaaaaaggatgctttttatacaattgag
gatttaaaaccaggtgattttgtcgttcacagaacacatggtattggcaaattcttggga
tttgaaaagattacagttgagggtacaacaaaagaatatgtaaaacttgaatatgctaac
tcttcttatttgtatgtcccaacaacaaacttggatgtgattgaaaagtatattggaaca
gacgatgtacagccaaaactatctaagcttgggtcacaagagtggcaaaagcaaaaacaa
aaggtaagaaaatctcttgagattgtagcaaaagacctggttgagctttatgcaaaaagg
cagcttgggaagggttttaaattttcaaaagatacgctgtggcagaaagagtttgaagag
aagtttccatatacagagacagaaggtcagcttcaggccatagaagagattaagagggat
atggaaagtgaaaagccgatggatagaatactttgcggcgatgttggctatggcaagact
gaggttgcaatgagagcagcattcaaagctgtgatggattcaaaacaggtggcagtactt
gttcctacaaccattcttgcgcagcagcattacatgacattttctgcacgaatgaaagat
tttccagtaacaattgaggttctctcacgtttaaaaagtgagacgcagcaaaagaaaata
gtaagaggtttgagggaaggcacaattgacattgtaattggaacgcacaggctattgtca
agcgatgttaagttcaaagaccttggtcttttgattattgatgaagagcacaagtttggc
gtggaagcaaaagagaagattaaaaagctaaaaacaaatgttgatgtgctaaccctcacc
gcaacgcccataccaaggacacttaacatggcacttttaggaatcagggatttgagcgtg
attgaagacccgccggaagacaggtttcctgtgcagacatttgtgcttgagtacaatgag
aggataataaaagaagctattttaagagaaatttcaagagggggtcaggtattttatctt
tacaataggataaaagatatacaagaggtggctgctaaacttcaaaatcttgtggacgac
agtataaaagttgcatgtgctcacgggcaaatgcccgaagaagagttggagagagtgtta
cttgattttattgaaggcaggtacaatgtgcttgtgtgcacaacaatcatagagtctggg
gttgacatgccaaacgtcaatacacttattgtggaagacagcgatagacttggtcttgct
cagctttatcagctaagagggagggtaggtcgttcttcaaggcttgcatatgcatatttt
acatttagaaaagacaaggtgctctccgaacaggcacaaaagagacttgctgcaataaaa
gagtttacagaacttggggctggttttaaaattgccatgagggaccttgagataagaggt
gctgggtctttgcttggaaaacttcagcatgggcatataaacagtgttgggtatgatatg
tatataagacttctttcagaagagataaggcgtcttaaaggtgaaaatatacagccagag
attgaacctcaaatagatgtaaaagtaagtgcatttattagtagcagttacattgatgat
gaaaaagagagaattaatatgtataaaaagatttcgtcaattgagtcaaaagatgatgta
aacgatatttatgatgaactaatagacaggtttggggatgtgccaaaggaggttgataat
ctgataaaggttgcatatttgaaatgtttgtgcaaaaaagcaggtataataagtattttg
cagtttcaagaaagtctttttaaacttcagtttttgaacaaagaaatgcttgaagctgca
aagatgaagtttttaaggaaaggactttcatatttacaaaacagggatgatatgttacag
ctcttgattgcaaataactggtttgataccttaatagctattttagaagatttacaagaa
aattaa
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