Allochromatium tepidum: Atep_11970
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Entry
Atep_11970 CDS
T07447
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atep
Allochromatium tepidum
Pathway
atep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Atep_11970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atep03400
]
Atep_11970 (mfd)
Enzymes [BR:
atep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Atep_11970 (mfd)
DNA repair and recombination proteins [BR:
atep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Atep_11970 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCU06520
LinkDB
All DBs
Position
complement(1281339..1284821)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSSSSPSESHSPLDPPLPRRPGERRLWGGLHGAGTALAIAGAAERHPGLVLVVVDAVQTA
ATRRAELGFFLDGRERPILDFPDWETLPYDVFSPLPELVSERLLTLHRLPTLEHGVLIVP
VATLMQRLPPRDYVDGHSLVLAVGDRLDLDATRRRLERAGYSCVSQVIGHGEYAVRGSLL
DVFPMGSQVPLRIDLFDEEVESIRVFDPETQRSRDKLDRIRLLPARELPLDEEAIAGFRQ
RYRAAIAGDPQRSLIYREVSKGQAPGGLEYYLPLFFEQTATLFDYLPEDTLVVESIECRE
TARTFFEGVEQRYEQRRHDAERPLLPPSQLYLTPEELAGRLNRLSGVLHQPDAVDARRKG
YADACNFATHPLPPLTIQARAAQPAQALQAFLTDGERRVLFVAESSGRRELLAEQLKGFD
IQARPVSGWRAFLDGDAALALTVAPIEQGLLLEDARLAVITESRLYGERVRQERRRRERE
RDSDAIVRNLTELTEGAPVVHEEHGVGRYLGLQTLEVGGLTTEFLTLEYANGDKLYVPVG
SLQLISRYTGASPENAPLHRLGGDQWERIKRKAAQKAHDVAAELLDIHARRAARRGIAFP
KGGEDYAAFAAAFPFEETPDQQRAIESVLADMADPKPMDRVVCGDVGFGKTEVAMRAAFM
AVHGGRQVVVLVPTTLLAQQHFENFSDRFADWPVRVESLSRFRTAKERKAVLDGLADGTI
DIVVGTHKLLQPTIRFKNLGLAIIDEEHRFGVRHKEQLKNLRSEVDVLTLTATPIPRTLN
MAMSGLRDLSIIATPPVERHPIKTFVSPWNDALVQEAVLRELKRGGQVYFLHNEVETIEN
QAQKLQALIPEARVAVAHGQMRERELERIMRDFYHQRSNLLVCTTIIESGIDVPSANTIL
INRADKLGLAQLHQLRGRVGRSHHRAYAYLITPPTKAMTADAKKRLEAIESMEDLGAGFT
LATHDLEIRGAGELLGDEQSGQITAVGFTLYMELLERAVEALKSGRAPELDRPLDHGTEI
DLGIPALLPSDYLPDVQARLVLYKRIAGARDREELRELQVEMIDRFGLLPEPAKNLLEIT
ELKLLVQPWGIRKIEAGPASGRLLFTESPRIDPARLIGLIQSRPKEYKLEGGDKLKFFRD
MAEPGARIREVRRVLEPLLA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcttctccatccgaatcgcactctccgctcgatccaccgctgccgcgccgt
ccgggcgagcgccggctctggggcgggctccatggcgccggcacggccctggccatcgcc
ggcgccgccgagcgtcatcccggactggtgctggtggtggtcgatgccgtccagaccgcc
gcgacccggcgtgccgagctggggttcttcctggacgggcgcgagcggccgatcctcgat
ttcccggactgggagaccctgccctacgacgtcttctcgccgctgcccgagctggtctcg
gagcggctgctgaccctgcatcgtctgccgacgctggagcatggggtgctgatcgtcccg
gtcgcgaccctgatgcagcgtctgccgccgcgcgactatgtcgatgggcattcgctggtg
ctcgccgtcggcgaccggctcgatctcgacgccacgcgccgacggctggagcgggcgggc
tattcgtgcgtctcgcaggtcatcgggcatggcgaatatgcggtgcgcggctcgctgctg
gacgtctttccgatgggcagtcaggttcctctgcgcatcgacctgttcgacgaagaggtc
gagagtatccgcgttttcgatcccgagacacaacgctccagggacaaactcgaccgcatc
cgactgctgccggcgcgtgagttgccgctcgacgaggaggccatcgccggtttccgacag
cgttatcgggccgccatcgccggcgatccgcagcgcagtctcatctatcgcgaggtctcc
aaggggcaggcgccgggcgggctggaatactatctgccgctgttcttcgagcagacggcc
acgctcttcgattatctgcccgaggataccctggtcgtcgagtcgatcgagtgtcgcgag
acggcgcgaaccttcttcgagggcgtcgagcagcgctacgaacaacggcggcatgacgct
gagcgtccgctgctgccgccgtcccagctctatctgacaccggaggaactggccgggcgg
ctcaaccggctctcgggcgtgctccatcagccggacgcggtcgacgcacggcgcaagggc
tatgcggatgcctgcaacttcgccacccatcccctgcccccgctgaccatccaggcgcgt
gccgcgcaaccggcgcaggccctgcaagccttcctcaccgacggcgagcggcgcgtgctc
ttcgtcgccgagagcagcggacggcgcgaactgctggccgagcagctcaagggcttcgac
atccaggcccgtccggtgtcgggctggcgggcgttcctcgacggcgatgccgcactcgcc
ctgacggtggcccccatcgaacagggtctgctgctggaggacgcgcggctcgccgtcatc
accgaaagccggctctatggcgaacgggtgcgccaggaacggcgtcgacgtgagcgcgaa
cgcgacagcgacgccatcgtccgcaacctcaccgagctgaccgagggcgcgcccgtcgtc
cacgaggaacacggcgtcggacgctatctgggactccagacactggaggtcggcggtctg
accaccgagttcctgacgctcgaatatgccaacggcgacaagctctatgtcccggtcggt
tcattgcagctgatctcgcgctatacgggcgcctcgcccgagaacgccccgctgcaccga
ctcggcggcgatcaatgggagcggatcaagcgcaaggcggcgcagaaggcgcacgacgtg
gccgccgagctgctcgacatccatgcccgacgcgcggcgcgccgggggatcgccttcccc
aagggcggcgaggactatgccgccttcgccgccgccttcccgttcgaggagaccccggac
caacagcgcgccatcgagtcggtgctggccgacatggccgatccaaagccgatggatcgc
gtggtctgcggcgacgtgggcttcggcaagaccgaggtggccatgcgcgcggccttcatg
gcggtgcacggcgggcggcaggtcgtcgtactggtgcccacgaccctgctggcgcaacag
catttcgagaacttctccgaccgcttcgccgactggccggtacgcgtcgagagtctgtcg
cgtttccgcacggcgaaggaacggaaagcggtcctggacggactggcggacggcaccatc
gacatcgtggtcggtacccacaagctgctccagccgacgatccgcttcaagaacctgggt
ctggccatcatcgacgaagagcaccgcttcggcgtgcgccacaaggagcagctgaagaac
ctgcgcagcgaggtcgatgtcctgacgctgaccgctacgccgatcccgcgcacgctcaac
atggccatgtccggtctgcgcgatctgtcgatcatcgccaccccgccggtcgagcgtcat
ccgatcaagaccttcgtcagtccctggaacgatgccctggtgcaggaagccgtactgcgc
gagttgaagcgcggcggtcaggtctacttcctgcacaacgaggtcgagaccatcgagaac
caggcccagaagctccaagccctgatcccggaggcgcgggtggcggtcgcccatggtcag
atgcgcgaacgcgagctggagcgcatcatgcgcgacttctatcaccagcgctccaacctg
ctggtgtgcaccaccatcatcgagagcggcatcgacgtgccctcggccaacaccatcctc
atcaaccgcgccgacaagctgggtctggcccagttgcaccagttgcgcggtcgggtcgga
cgctcgcaccatcgcgcctacgcctatctcatcacgccgccgaccaaggccatgacggcg
gatgcgaaaaaacggctggaggccatcgagtcgatggaggatctgggcgcgggcttcacg
ctggcgacccatgatctggagatccgcggcgcgggcgagctgctgggcgacgagcagtcg
ggccagatcaccgcggtcggtttcacgctctacatggaactgctggaacgcgcggtcgag
gcgctgaagtcaggacgcgcgcccgagctggatcgcccgctcgatcacggcaccgagatc
gatctcgggattccggcgctcctgccgagtgactatctgccggacgtgcaggcgcggctg
gtgctgtacaagcgcatcgccggcgcgcgcgaccgcgaggaactgcgcgaattgcaggtg
gagatgatcgaccgcttcggcttgctgcccgaaccggcgaagaatctgctggagatcacc
gagttgaagctcctggtccagccctggggtatccgcaagatcgaggccggaccggcgagc
gggcgtctgctcttcaccgaatcgcccaggatcgatccggccagactcatcggtctgatc
cagagccggcccaaggaatacaagctggaaggcggcgacaagctgaaattcttccgcgat
atggccgagcctggagcacggattcgcgaggttcggcgcgtactggagccgctgctggca
tag
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