Aquincola tertiaricarbonis: MW290_06505
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Entry
MW290_06505 CDS
T08158
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ater
Aquincola tertiaricarbonis
Pathway
ater03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ater00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MW290_06505 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ater03400
]
MW290_06505 (ligD)
Enzymes [BR:
ater01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MW290_06505 (ligD)
DNA repair and recombination proteins [BR:
ater03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MW290_06505 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
URI08220
LinkDB
All DBs
Position
1:complement(1406896..1409463)
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AA seq
855 aa
AA seq
DB search
MADPLQRYRDKRDFSATPEPQGGQHQGEALPFVIQKHAARALHYDFRLALDGTLKSWAVP
KGPSLDPHERRMAVEVEDHPLDYARFEGTIPAGHYGAGQVIVWDRGTWQPEGDARAGLAA
GKLKFRLQGQKLGGRWTLVRMRGRGSERQTPWLLIKEHDDAARPAAEYSVTEAEPGSVIS
DAVIAAPAKTTKPARKKSAPAPAAKVAAKSAVPLPDTLAPQLATLVDGVPTEGDWLYEMK
FDGYRLLARIEAGEVKLFTRNGHDWTAKLRALAKELASLGLHKAWLDGEIVVLDAQGVPS
FQRLQNVFEQRRTQDIVYYLFDAPFLQGEDLRPLPLRVRRQRLRDALEAAGDPPHLRFSE
DFAVDAAQLLHTACQMRMEGVIGKRADAAYASGRQRSWIKLKCQQRQEFVIGGWTDPQGS
RTGLGALLLGVHDAAGALHYAGNVGTGFNQQSLADLSRQLKAIAADAPPFKGLPRGIKGH
WVQPRLIAEVSFAEWTKDGRVRQAVFHGLRTDKKPEAIGRERAVPAPGPAPAARKRTQAA
SARPADRLSSGPPPGPPPGLPPGLRLTHASRVIDAASGTTKQQLAEYMHRAATRLLPHLR
GRPVSLVRAPAGVAGELFFQKHDSGKIKGLRQLDPAFDPDHAPLMEVATRTALLNAVQMN
VIEFHTWNATTRAIDQPDRMTFDLDPGEGVAWPQIAEGAQLVKALLDELGLRALLKTSGG
KGLHVVVPFKPSLGWDAVKALSQQIVQHLARTLPDRFVAKSGPRNRVGKIFVDYLRNGRG
ATTVAAWSTRARPGLGISVPVGWDELPQLTGGAHFHIGNIDARLQAPDAWAGEASAAARQ
TLRNAMRILDFVPPA
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggccgatccgctgcagcgctaccgcgacaagcgcgacttcagcgccacgccggagccg
cagggcgggcagcatcagggtgaggcgctgcccttcgtcatccagaagcatgcggcccgt
gcgctgcactacgacttccggttggcgctggacggcacgctcaagagctgggcggtgccc
aaaggccccagcctcgacccgcatgagcgccgcatggcggtggaggtggaagaccacccg
ctggactacgcccgcttcgaaggcaccatcccggccggccattacggtgccggtcaggtc
atcgtgtgggaccggggcacctggcagcccgaaggtgatgcccgcgccggcctggccgcc
ggcaagctcaagttccggctgcagggccaaaagctgggtggccgctggaccctggtgcgc
atgcgcggccgtggcagcgagcggcaaacgccctggctgctgatcaaggagcatgacgac
gccgcgcgcccggccgccgaatacagcgtgaccgaggccgagcccggcagcgtgatcagc
gatgcggtgatcgccgcgccggccaagaccacgaagccggcgcgcaagaaaagcgcgccc
gccccggccgccaaggtcgccgccaagtcggccgtgcctttgcccgacaccctggcgccg
cagttggccacgctggtggacggcgtgccgaccgagggcgactggctgtacgagatgaag
ttcgacggctaccggctgctggcccgcatcgaggccggcgaggtcaagctgttcacccgc
aacggccacgactggacggccaagctgcgcgccctggccaaggagctggcgtcgctgggc
ctgcacaaggcctggctggacggcgagatcgtggtgctggacgcgcaaggcgtgcccagc
ttccagcggctgcagaacgtgttcgagcagcggcgcacgcaggacatcgtctactacctg
ttcgacgcgcccttcctgcagggtgaagacctgcggccgttgccgttgcgcgtgcgccgg
cagcgcctgcgcgatgcgctggaggcggcgggtgacccaccgcacctgcgcttcagcgaa
gactttgcggtggacgccgcgcagctgttgcacaccgcctgccagatgcgcatggaaggc
gtgatcggcaagcgggccgatgcggcttacgccagcggccgccagcgcagctggatcaag
ctcaagtgccagcagcggcaggagttcgtcatcggcggttggaccgacccccagggcagc
cgcaccggcctgggcgcgctgctgctgggcgtgcacgatgcggccggcgcgttgcactat
gccggcaacgtgggcaccggcttcaaccagcagtcgctggccgacctgtctagacaactg
aaggccattgccgccgacgcaccgccgttcaagggtctgccgcgcggcatcaagggccac
tgggtgcagccgcgcctgatcgccgaggtgtcgttcgccgagtggacgaaggacggccgc
gtgcgtcaggcggtgttccatggcctgcgcaccgacaagaagcccgaggccatcggccgc
gagcgggcagtgccggcgccgggccccgcaccggcggcccgcaagcgcacccaggccgct
tcggcccggccggccgaccgcctgtcgtcgggcccgccgccgggcccgccgccgggcctg
cctccgggcctgcgcctgacccatgccagccgcgtgatcgatgccgccagcggcaccacc
aagcagcagctggccgagtacatgcaccgtgcggccacgcgcctgctgccgcacctgcgc
gggcggccggtgtcgctggtgcgtgcgccggccggtgtggccggcgaactgttcttccag
aagcacgacagcggcaagatcaagggcctgcggcagttggacccggccttcgatcccgac
catgcgcctctgatggaggtggccacccgcaccgcgctgctgaacgcggtgcagatgaac
gtgatcgagttccacacctggaatgccaccacccgcgccatcgaccagcctgaccgcatg
accttcgacctggacccgggcgaaggcgtggcctggccgcagattgccgagggcgcgcag
ctggtgaaggccttgctggacgagctgggcctgcgcgcgctgctcaagaccagcggcggc
aagggcctgcatgtggtggtgcccttcaagccctcgctgggctgggacgcggtgaaggcc
ttgtcccagcagatcgtgcagcacctggcgcgcacgctgcccgaccgcttcgtggccaag
agcgggcccaggaaccgggtgggcaagatcttcgtggactacctgcgcaacggccgcggc
gccaccacggtggcggcctggtcaacgcgggcgcggccggggctcggcatctcggtgccg
gtgggctgggacgaactgccgcagctgaccggtggtgcgcactttcacatcggcaacatc
gacgcgcgcctgcaggccccggatgcctgggccggtgaggccagcgccgcggcccgccaa
accctgcgtaatgcgatgcggattctggatttcgtgcctccagcatga
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