Agrobacterium tumefaciens Ach5: Ach5_17050
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Entry
Ach5_17050 CDS
T03816
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ach5_17050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atf03400
]
Ach5_17050 (mfd)
Enzymes [BR:
atf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ach5_17050 (mfd)
DNA repair and recombination proteins [BR:
atf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ach5_17050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
Glyco_tran_WecG
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKC07481
UniProt:
A0AA86FVS8
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All DBs
Position
circular:complement(1748546..1752043)
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AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVASADTPLTIGNVPSGMEALLLADMARAGTSVAYVMSDGQRVADLEQILGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAIVLVTVNAMLQK
MAPRDVIESLGFSAKPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEELETAFDYLSGFRIVTDHTAREAAKERSKL
VLDYYEARRASGETKGSTQGAPYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEG
RPVATLDAHVGPRWARPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVTSLKEVEKLGKGEAASAVLSLEAGFETGTLAIIGEQDILGDRMVR
RSKRRKRGADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PALIAPDGLYDEFAARFPYDETEDQLNAIDAVRDDLGAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVA
DGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEEVRDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADIGEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNR
DLPTPEKRLAGAAMVMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtggcgtcggccgatacgccgctgaccatcgga
aacgtgccctccggcatggaagccctgctgctcgccgatatggcgcgggcgggaacatcg
gtggcttacgtgatgtcggacggccagcgggtcgccgatctcgaacagattcttggtttt
gtcgcgccggatattccggtgttgacgctgccggcctgggattgtctgccttatgaccgc
gtgtcaccgagtgcggacacctcggcgcgccggctcgcggcacttgccggcctcatcaat
cacgccaagaaaccgcatccggccatcgttctcgtcaccgtcaacgccatgctgcagaag
atggcgccgcgcgacgttatcgagagcctgggcttttcggccaagcccggcaaccagatc
cgcatggaggacatcgccgcgcggctggagcgcaacggtttcgaccgggtggcgacggtg
cgtgaagtgggtgaattcgccgtgcgcggcggcattctcgatgtcttcgtgccgggcacc
gaagagccggtgcggctcgatttcttcggcgatacgctggaaagcatccgcaccttcgat
ccggccagccagcgcaccatcgcacaggcgcgctcgctggatctcaatccgatgagcgaa
gtgacgctgacgccggatacgatcggccggttccgtaagaattacctgtcgctattcggt
gcggcgacgcgcgacgatgcgctttatcaggcagtctccgaaggccgccgttatgccggc
atggagcactggctgcctctgttttacgaagagctggaaaccgccttcgattatctcagc
ggtttccgtatcgtcaccgaccatacggcgcgagaggctgcgaaggaacgctccaagctg
gtcctcgattattacgaggcgcggcgggcttcgggcgagaccaagggctcgacgcagggc
gcgccttacaagccggtatcgcctgggcaaatctatctcgacggcaagagcttcgaggcg
gcgcttgcgagcgtcaatgcggtgcggctgacgcccttcaacgaacacgatagcgaaggt
cgcccggtcgcgacgcttgatgcccatgttggtccgcgctgggcacgtccaccgacggaa
ggcgacagcgaagagcgggtcaatgttttcgatctggcggtaaagcacattgccgagcgc
cgggccaagggctggaaggttttgatcaccggctggtcggaaggttcgctcgaccggctg
ttgcaggtcttgaacgaacacgggcttgaaaagatcaagccggtgacatcgctgaaagag
gtggagaaactcggcaagggtgaggcggcttctgcggtgctgagcctcgaagccgggttt
gagaccggaacgctcgcaatcatcggcgagcaggatattcttggcgaccgcatggtgcgc
cgttccaagcgccgcaagcgcggcgcggatttcatcgcggaagtggcggggctggacgaa
ggctcgctcgtggttcacgccgaacacggcatcggtcgcttcgtcggtttgcagaccatc
gaggcagcgggcgcgccgcgcgcctgtctggaactgcattatgccgacgacgccaagctg
ttcctaccggtcgaaaacatcgatcttctctcgcgttatggttctgatgccgcggaagcc
acgctcgacaagctcggtggcggcgcatggcagatgcgcaaggccaaactcaagaagcgc
ctgctcgatatggccgacgagcttatccgcattgcagccgcgcgtctggtgcgccacgcg
ccggcgcttatcgcaccggacgggctttacgacgagtttgccgcccgtttcccctatgac
gagaccgaggaccagctgaacgccatcgacgctgttcgcgacgatctcggtgccgggcgg
ccgatggatcgcctgatctgcggcgatgtcggtttcggcaagaccgaagtggccttgcgc
gccgctttccttgccgccatgaatggcgttcaggtggcggtggtggtgccgaccacgctt
ctggcgcgacagcatttccgtaccttttccgaacggtttcgcggtctgccgatccgggtg
cagcaggcctcgcgccttgtgggttcgaaggagcttgcgctcaccaagaaggaagtggct
gatggaaagaccgacattgtcgtcggcacccatgcgctgctcggtgcgggcatcagcttc
gccaatctcggcctgctgatcatcgatgaggagcagcatttcggtgtgaagcacaaggag
cggctgaaggagctgaaaagcgacgtgcatgtgctgacgctgtcggcaacacccattccg
cgcaccttgcagctggccatgaccggcgtgcgcgagctgtcgctcatcaccacgccgcca
gtggaccgcatggcggttcgcaccttcatttcgcccttcgatccgctggtaatccgtgaa
acgctgatgcgcgagcattatcgcggtggccagagcttctatgtctgcccccgccttgcc
gatctcgccgatatccatgcattcctgcagtcggatgtgccggaactgaaagtggcggtg
gcgcatggccagatggcggcgggtgaactcgaagacatcatgaacgccttctatgacggc
aaatacgatgtgctgctttcgaccaccatcgtcgaatccggcctcgacgtgccgaccgcc
aatacgctgatcgtgcatcgtgccgacatgttcggtcttgcccagctttaccagctgcgt
ggccgtgtcggtcgttccaaggtccgcgccttcgcgctgttcaccctgccggtcaacaag
gtgttgacgacgatggcggagcggcggctgaaagtgctgcaatcgctcgacacactcggc
gccggtttccagcttgccagccacgatctcgatattcgcggcgcgggcaatctgcttggc
gaagaacagtccggccacatcaaggaagtcggcttcgagctttaccagcagatgctggaa
gaggccgtggccgaagtgaagggtgacgaagaggtgcgcgacagcggctggtcgccgcaa
atctcggtcggcacctcggtgatgatcccggaagactacgtgccggatctgcatctgcgc
atgggtctctaccgccgtctcggcgagcttgcggatataggcgagatcgacggtttcggc
gcagaaatgatcgaccgtttcggcccgctgccgaaggaagtgcagcatctcctcaagatc
gtctacatcaagtcgctctgccgcacggccaatgtcgagaaggtggatgccgggccgaaa
ggcgtggttgtgcagttccgcaacaaggaattccccaatccggcagcgcttgtcggttat
attggcaagcagggctcgatggcgaaaatccgcccggaccacagcctgttcctgaaccgc
gatctgccgacgccggaaaaacggctggcgggtgcggcgatggtcatgacgcaattggcg
gagctggctcggtcgtag
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