Arabidopsis thaliana (thale cress): AT1G08130
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Entry
AT1G08130 CDS
T00041
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03030
DNA replication
ath03410
Base excision repair
ath03420
Nucleotide excision repair
ath03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AT1G08130 (LIG1)
03410 Base excision repair
AT1G08130 (LIG1)
03420 Nucleotide excision repair
AT1G08130 (LIG1)
03430 Mismatch repair
AT1G08130 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ath03032
]
AT1G08130 (LIG1)
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT1G08130 (LIG1)
Enzymes [BR:
ath01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AT1G08130 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
AT1G08130 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
AT1G08130 (LIG1)
DNA replication proteins [BR:
ath03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
AT1G08130 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
AT1G08130 (LIG1)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
AT1G08130 (LIG1)
NER (nucleotide excision repair)
Other NER factors
AT1G08130 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
AT1G08130 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
837333
NCBI-ProteinID:
NP_172293
TAIR:
AT1G08130
UniProt:
Q42572
LinkDB
All DBs
Position
1:complement(2542663..2547946)
Genome browser
AA seq
790 aa
AA seq
DB search
MLAIRSSNYLRCIPSLCTKTQISQFSSVLISFSRQISHLRLSSCHRAMSSSRPSAFDALM
SNARAAAKKKTPQTTNLSRSPNKRKIGETQDANLGKTIVSEGTLPKTEDLLEPVSDSANP
RSDTSSIAEDSKTGAKKAKTLSKTDEMKSKIGLLKKKPNDFDPEKMSCWEKGERVPFLFV
ALAFDLISNESGRIVITDILCNMLRTVIATTPEDLVATVYLSANEIAPAHEGVELGIGES
TIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGSRSTQTMMFKPEPLTVVKVFDTFRQIA
KESGKDSNEKKKNRMKALLVATTDCEPLYLTRLLQAKLRLGFSGQTVLAALGQAAVYNEE
HSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPML
AKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMEDGTFEIYSRNAERNTGKYPDVALA
LSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLY
LNGQQLIQENLKIRREKLYESFEEDPGYFQFATAVTSNDIDEIQKFLDASVDVGCEGLII
KTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLACYD
VDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEV
KAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQIADLYQAQKHNH
PSNEVKGDDD
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgttagcgattcgatcgtcgaattacctccgatgcataccttctctctgtactaaaacc
caaatctctcaattctcctccgtgttaatctcttttagccgccaaatttcccacttgcgt
cttagctcgtgccatagagccatgtcttcttcccgcccttctgcatttgatgctctcatg
tccaatgctcgtgcagccgccaagaagaagactccccagacaactaatttgtctcgctcg
ccgaacaaaaggaaaattggagaaacccaagatgctaatttgggcaaaactattgtttcc
gaaggtacacttccaaaaacggaggatctgctggagcctgtttctgattctgcaaatccc
agatcggatacatcgtcaattgcggaggattcaaagacgggagcgaaaaaggctaagact
ttgagcaagacagacgaaatgaagagcaaaattggattgctgaagaagaagccgaatgat
ttcgatcctgaaaaaatgtcttgctgggagaaaggggagagagttccgtttctgtttgtc
gcattggcttttgatctgatctcaaatgaaagtggccggattgtgattactgatattctg
tgtaacatgttgagaactgttattgccactactcctgaggatttggtcgctactgtttat
ctttcggcgaatgagattgccccggctcatgaaggtgtagaattgggaattggtgagagt
acaattatcaaggctatctctgaggcttttggtagaactgaggatcatgttaagaagcag
aatacggaactgggagacttgggacttgtagcaaaaggaagccgttcgactcagactatg
atgttcaagcccgaaccattgactgttgtcaaggttttcgatacgtttcgacaaattgct
aaggaaagtggaaaagatagtaatgaaaagaagaagaatcgaatgaaggcacttcttgtg
gcgacaacagactgtgaacctctttacttaacacgattacttcaggcaaaattgcggtta
gggttctcaggtcagactgtcttagccgcattgggacaagccgctgtatataatgaagag
cactcaaagccacccccaaataccaagtctcctttagaagaggctgcaaagattgttaaa
caagtattcactgtacttcctgtctatgacattattgttcctgctcttctaagtggcggt
gtgtggaatcttccaaaaacttgtaactttacattgggtgttccaattggacccatgctt
gcaaaaccaaccaaaggtgtagctgagatactgaataaattccaggacatcgttttcaca
tgtgaatacaaatatgatggggaacgtgcacagatacattttatggaggatggtacattt
gagatatacagtcgaaatgctgaaagaaacactgggaagtacccggatgttgctcttgcg
ttatcaagattaaagaagccttctgtgaaatcttttattctggattgtgaagttgttgct
ttcgacagggagaaaaagaaaattcttccgttccagattttgagcactcgagcccgtaaa
aatgtgaatgtcaatgatatcaaggttggcgtatgcatctttgcttttgacatgttatat
ctaaatggccaacaacttatccaggagaatcttaaaattcgccgagagaagctatacgaa
tcatttgaggaagatcctgggtatttccagtttgcaactgctgtaacatctaacgatatc
gatgaaatacaaaagtttcttgacgcttctgttgatgttggctgcgaaggtttaatcatt
aaaacattggactcagatgctacctatgagcctgcaaagcgatcaaataattggctaaaa
ctgaagaaagactatatggacagcattggggactctgtggatcttgtaccaattgctgct
ttccatggacgtggaaaacgcacaggtgtctatggtgcatttttactcgcttgctatgat
gttgataaggaagagttccagagcatttgtaaaattggtactggattttctgatgccatg
cttgacgagcggtcgtccagtcttcgctctcaagtgattgctactccaaaacaatactac
cgagttggagacagcctcaatccagatgtttggtttgagcccactgaggtctgggaagtg
aaagcagctgacttaacaattagccctgtgcaccgtgcagctactggcatagtggatcct
gataaggggatttctcttcgttttcctcgtctacttcgtgtacgggaagacaagaagccc
gaggaagcaacatcatctgagcagattgctgatttgtaccaagctcagaaacacaatcat
ccaagtaatgaagtcaaaggtgacgatgattga
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