Arabidopsis thaliana (thale cress): AT1G30350
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Entry
AT1G30350 CDS
T00041
Name
(RefSeq) Pectin lyase-like superfamily protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath00040
Pentose and glucuronate interconversions
ath01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
AT1G30350
Enzymes [BR:
ath01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
AT1G30350
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
OppC_N
Motif
Other DBs
NCBI-GeneID:
839915
NCBI-ProteinID:
NP_174324
TAIR:
AT1G30350
UniProt:
Q9C8G4
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Position
1:complement(10709999..10711667)
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AA seq
368 aa
AA seq
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MASLVVIVSLLLAAFASPLLETAHSYNVTAPRVSLNPIDACWRRNPKWATNRQALAHCAV
GYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMI
NSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGMDGDGIRVFQSTHVW
IDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTF
GPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSANPIIFSEGNYFVAPEKRSSKQVTKR
MMAGPDSKRWKWGTSRDVFMNGAFFGPPGVIVRPLYKGGEGFRVAHGSLVPSLTSSAGPL
RCYVGRIC
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggcttctctcgtggtaatagtttcacttctcttggcagctttcgcttctcctctttta
gagactgctcatagttataatgtaaccgcccccagggtatcactaaatccaattgatgct
tgctggcgaagaaaccctaaatgggcgactaatcgtcaagccctagcacattgcgcggta
gggtacgggaaagcagcaatagggggaaaaaacggtccgatctacgtggttacaaaccca
tcagacaaccctacacgccctagccccggaaccttaagatatgcggtgagccaacctaaa
ccgctgtggatcacatttgcacgtgacatggtgatagtgttgaaaagccagctcatgatt
aacagctacaagacaatcgacggaagaggggcaaaggttgaaattgccaacggaccatgc
ttaaggatcagacaagtgaagcatgtcattatacatgggataagtatccatgattgtaaa
gcagatcccaatggaatggatggtgatggaatacgcgtttttcaatctacacatgtttgg
atcgatcattgtttcctttctcggtgccatgatggtttgatcgatgtgattgtttcttct
acggctgtcacgatttcaaataactacttcacgcagcatgataaagtgatgttactcgga
catgatgacagttatatgggagataaggacatgagagttacaattgcattcaatactttt
ggaccgggtctcattgagagaatgcctagggtgaggagagggtatgcacatgtagcaaac
aataggtacgagaaatggcaaatgtacgcgatcggaggaagtgctaatccaattatcttt
agtgaaggcaactacttcgttgctcccgaaaaacgtagcagcaaacaggtgacgaagaga
atgatggctggacctgattctaaaagatggaaatggggtacgtctagagatgttttcatg
aacggagctttcttcggaccgccaggagtaatagtcaggccgttgtacaaaggaggagag
gggtttcgggtggcacatggctctctcgtcccttctcttacttcctctgccggtcctctc
cgttgctacgtcggcaggatttgctaa
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