Arabidopsis thaliana (thale cress): AT2G45810
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Entry
AT2G45810 CDS
T00041
Name
(RefSeq) DEA(D/H)-box RNA helicase family protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT2G45810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT2G45810
03036 Chromosome and associated proteins [BR:
ath03036
]
AT2G45810
Enzymes [BR:
ath01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT2G45810
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
AT2G45810
mRNA degradation factors
5'-3' decay
Decapping complex
AT2G45810
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Gene silencing
piRNA pathway
AT2G45810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
TMEM51
Motif
Other DBs
NCBI-GeneID:
819189
NCBI-ProteinID:
NP_182105
TAIR:
AT2G45810
UniProt:
Q94BV4
A0A654F2A0
LinkDB
All DBs
Position
2:18859472..18862970
Genome browser
AA seq
528 aa
AA seq
DB search
MNNNNNNRGRFPPGIGAAGPGPDPNFQSRNPNPPQPQQYLQSRTPFPQQPQPQPPQYLQS
QSDAQQYVQRGYPQQIQQQQQLQQQQQQQQQQQEQQWSRRAQLPGDPSYIDEVEKTVQSE
AISDSNNEDWKATLKLPPRDNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPI
QEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQ
VCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAML
VMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQ
LTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFY
IHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVG
RSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIYCQ
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaataataataataataatagaggaagatttccaccggggattggtgcggcgggtcct
ggtccggatcctaattttcagtcacggaatccgaatccacctcagcctcaacagtacctt
cagtcacggactccgtttccacagcaacctcagcctcagcctcctcagtatctccagtct
caatctgatgctcagcagtacgttcagcgaggttatccccagcagattcaacagcaacag
caactgcagcagcaacaacaacaacaacagcagcagcaagaacaacaatggtctcgacgg
gctcagcttcctggtgatccaagttacatagatgaggtcgaaaaaacggttcaatctgaa
gctattagcgattctaataatgaagactggaaagcaaccttaaagctgccaccacgagat
aatcgttaccagacagaggatgtgactgccactaaaggaaatgaatttgaagattacttt
ttgaagagggatctgcttaggggaatatatgagaagggttttgaaaaaccatctcctatt
caggaagaaagcattcccattgctttgactggtagtgatattcttgctagagccaaaaat
ggtactgggaagactggtgccttctgcattcctacccttgagaaaattgatccagagaac
aatgtcattcaagccgtaattctagttccaacccgagagctcgcccttcagacatcccag
gtttgcaaggagctttccaaatatttgaaaattgaggttatggtcaccactggcggtacc
agtctgagggatgatatcatgcgattgtatcaacctgtccatttactggttggaactcct
ggaagaatattagatcttgccaaaaagggtgtgtgtgttttgaaagattgtgccatgctt
gtaatggatgaggccgacaagcttttgtctgtagaatttcaaccttctatagaggagttg
atacagttcttgccagagagccggcagattttgatgttttcagctacatttcctgtcact
gtgaagtctttcaaggatcggtatctcaagaagccttacattatcaatctcatggatcag
ctcacacttatgggtgttacccaatattatgcttttgttgaagagagacagaaggtgcac
tgccttaacacgctattctctaagctccaaataaaccaatccattatcttttgcaactct
gttaatcgtgttgagctgttggccaagaaaattacagaacttggttactcatgcttctat
atccatgcaaagatggttcaagaccatcggaacagggttttccatgatttccgcaatggt
gcatgcagaaatcttgtttgcactgatttgtttacacgtgggattgacattcaagctgtg
aatgtggtgataaatttcgattttcctaggacttctgagtcgtatctacatagggtaggc
agatcaggacgatttggacaccttgggttggctgtgaatttggtaacttatgaggaccgc
ttcaaaatgtatcagacagagcaagaacttggaactgaaatcaagcccataccttcactt
atcgacaaggcaatctactgtcagtaa
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