Arabidopsis thaliana (thale cress): AT4G02070
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Entry
AT4G02070 CDS
T00041
Symbol
MSH6
Name
(RefSeq) MUTS homolog 6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AT4G02070 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT4G02070 (MSH6)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
AT4G02070 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Motif
Other DBs
NCBI-GeneID:
828147
NCBI-ProteinID:
NP_192116
TAIR:
AT4G02070
UniProt:
O04716
A0A654FL40
LinkDB
All DBs
Position
4:905865..913290
Genome browser
AA seq
1324 aa
AA seq
DB search
MAPSRRQISGRSPLVNQQRQITSFFGKSASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPS
PSPSPPKKTPKLNPNPSSNLPARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQSVVITY
GDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWVVGEK
SGDRFNRLKRGASALRKVVTDSDDDVEMGNVEEDKSDGDDSSDEDWGKNVGKEVCESEED
DVELVDENEMDEEELVEEKDEETSKVNRVSKTDSRKRKTSEVTKSGGEKKSKTDTGTILK
GFKASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAKRRRPT
DENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKEL
DIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVK
REVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVATQKIIL
GQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLSEFWDS
EKTIYEVGIIYKRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGA
IYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGT
LYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEFRKSLSRLP
DMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRGCETMAEACSSLRAILKH
DTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYDCACKTVEE
FESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSSKKGVSRYW
TPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDVLISLAFAS
DSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGGAEKASFIL
LTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFL
TELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRGFFSTHYHR
LSVDYQTNPKVSLCHMACQIGEGIGGVEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVL
QRAVIKSQEFEALYGKNHRKTDHKLAAMIKQIISSVASDSDYSASKDSLCELHSMANTFL
RLTN
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atggctccgtctcgccgacagatcagcggaagatctccgttggtgaaccagcagcgtcaa
atcacctccttctttgggaaatctgcttcatcatcttcttctccgtctccatctccttca
ccatctctctccaataagaaaacccccaaatctaacaaccctaaccctaaatctccgtct
ccgtcaccatctccgcctaagaaaacccccaaattgaaccctaaccctagttctaatctt
cctgctcgtagtcctagccctggtcctgatactccttctcctgtacagtccaagtttaag
aagccccttctcgtcatcggacagacaccttcgcctcctcaatcggtggtaattacttac
ggtgacgaggtggtggggaagcaagttagggtttattggcctttggataaaaaatggtat
gatgggagcgtgacgttttatgataagggtgagggtaagcatgtggttgagtatgaagat
ggggaagaagagtctttggatttgggaaaggagaagactgagtgggtggttggggaaaaa
tcaggagataggtttaatcgattgaaacgaggcgcttcggctttgagaaaagttgtgacg
gatagtgatgatgatgtggagatgggtaatgtggaagaagataaaagtgacggtgatgat
tctagcgatgaggattggggaaagaatgttgggaaggaggtttgtgagagtgaagaagat
gatgtggagttggttgatgagaatgaaatggatgaagaagagttggtggaagagaaagat
gaagaaacttctaaagttaatagagtatccaaaactgactctagaaagcggaagactagt
gaagtaacgaaatcaggtggtgagaagaaaagcaagactgatacaggcactatcttgaaa
ggttttaaggcttctgttgtggagcctgcgaagaagattggacaagctgatagggtggtc
aagggtttggaagataacgtgttggatggggatgctcttgctagatttggtgctcgtgat
tctgagaaattccgctttttgggagtagaccgaagggatgctaaaaggagacgccctact
gatgagaattatgatccgaggacactctacctccctcctgattttgtgaaaaaattaact
ggaggccagagacaatggtgggagtttaaagcaaagcatatggacaaagttgtattcttc
aagatgggtaaattctatgagctttttgagatggatgcacatgtcggagctaaggaactg
gatatacaatacatgaagggagagcaacctcattgtggatttccggagaagaatttttct
gtaaacattgagaaattagttagaaagggctatcgggttttagttgtcgaacaaacagaa
acacctgatcagctggagcaacgccgaaaagagacaggttccaaggataaagttgtgaag
cgcgaagtatgtgcagttgttacaaaaggcacgctgacagatggggagatgctattaact
aatccggatgcatcttatctaatggccttgactgaaggaggagaaagtttaactaatcct
acagcagagcacaattttggtgtatgtttggttgatgttgcgacacagaagataatactg
ggccagtttaaggatgatcaagattgcagtgcattatcttgcctgctatctgagatgagg
ccggtggaaattattaaaccagctaaggtgttgagttatgcaacagagagaacaatagtt
agacaaaccagaaatcccttagtaaataatctcgttccactttctgaattttgggattcg
gagaagaccatatatgaagttggaattatctacaagcgaatcaattgtcaaccgtcttct
gcttattctagtgagggaaagattctaggtgatggttcaagctttcttccaaaaatgttg
tctgaattagcaactgaagataagaatggtagcctggcactctctgctcttggtggtgcc
atttactacctgcgacaagcattcttggatgagagtctgcttagatttgcaaagtttgaa
tccctgccttactgtgatttcagcaacgttaatgagaagcagcacatggttcttgatgct
gctgctcttgaaaaccttgagatatttgaaaacagtagaaatggaggctattcaggaacg
ctgtatgctcaactgaatcaatgtatcactgcatctgggaaacggttactgaaaacatgg
ctggcaagacctttatataatacggaactgatcaaggaacgacaagatgctgtagcaatt
ctgcggggtgaaaatcttccgtactcactggaattccggaagtcgttgtccagacttcca
gacatggaacggttgattgcacgtatgttttctagcattgaagctagtggaagaaatggc
gataaagtggtgctatatgaagatacagctaagaagcaggtacaggaattcatatcaact
ctacgtggttgtgaaacaatggcagaagcatgctcttctctccgtgctatcttgaagcat
gatacatccaggcggctgcttcatttactaactcctggtcaaagtcttccaaatatatca
tcctccataaagtatttcaaggatgcttttgactgggtagaagctcacaattctggacgt
gtaataccccatgaaggagcagatgaagagtatgattgtgcctgcaaaacagtagaagaa
tttgagtccagtttgaaaaaacatctgaaagagcaacggaaattactcggagatgcatca
ataaactatgttacagttggaaaagatgaatacctcttggaagttcctgaaagtttaagt
gggagtgttcctcatgattatgaattatgctcatcgaaaaagggtgtctctcgatattgg
actcctaccataaagaaattattaaaagagctatcacaagcaaaatctgaaaaagagtcg
gccctgaagagcatttcacagagattgattggacgtttctgcgagcatcaagaaaaatgg
agacaattggtttctgcaacagctgagctggacgtgttgatcagcctcgcttttgcaagt
gattcttatgaaggagtaagatgccgcccagtaatatctggttctacatctgatggtgtt
ccacacttgtctgccactggtctagggcatccagttctaaggggtgattcgttaggcaga
ggctcttttgtaccaaataatgtaaagataggtggtgctgagaaagccagtttcatcctc
ctcacaggccctaatatgggtggaaaatcaacccttcttcgccaagtttgcttggctgta
atcttggctcagattggagcagatgtcccagcagaaacctttgaggtttcgcctgttgac
aaaatttgtgtccggatgggtgcaaaagatcatatcatggcaggacaaagcacgttttta
acagaactttcagaaactgcggtaatgttgacatcagccacccgaaactcgctggtggtg
ctagatgagcttggacgaggaacagccacatcagatgggcaagccattgcggaatccgta
cttgagcacttcatagaaaaggtgcagtgtagaggattcttctctactcattatcatcgt
ctctctgtggattatcaaaccaatccaaaggtctcactttgccatatggcatgtcaaata
ggagaaggaatcggtggagtagaagaagttacatttctctatagattgactcctggtgca
tgtcctaaaagttatggagttaacgttgctcggttagctggtcttccagattacgtactc
cagagagccgtgataaaatcccaagaattcgaggctttgtacggtaaaaaccatagaaaa
accgatcataaattagcagcaatgataaagcagatcatcagcagtgttgcatcagattct
gattactcagcttcaaaggactcattgtgtgagctacactccatggccaatacatttctc
cggttaaccaactaa
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