Arabidopsis thaliana (thale cress): AT4G17020
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Entry
AT4G17020 CDS
T00041
Name
(RefSeq) transcription factor-like protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03022
Basal transcription factors
ath03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AT4G17020
09124 Replication and repair
03420 Nucleotide excision repair
AT4G17020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ath03021
]
AT4G17020
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT4G17020
Transcription machinery [BR:
ath03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AT4G17020
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AT4G17020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
827410
NCBI-ProteinID:
NP_193435
TAIR:
AT4G17020
UniProt:
Q680U9
LinkDB
All DBs
Position
4:complement(9577776..9581439)
Genome browser
AA seq
452 aa
AA seq
DB search
MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPA
TMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGVL
PREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLS
QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTGQ
AYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVV
METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL
QQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREW
RGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagttaagatcattgctaaaaatttcatggacatggtggcgtcacttccagcc
atcaagcttgacaaactctacaacaatgtctttatctgcgaagccattctcaggtctttg
ccgcctcttgccaagaagtatgtattgcagatgttgtacattgatgttcctgtacctgct
acgatgatggaggagtgggtgctcgcagatggcacctctaaacatagagttgctattgat
cgactgattcaattaaggattttttcagaaattagtgataggaaaaggggaaccagctac
agcctaaatcctacatttcagaacaatcttcagaaacatattatttccggtggagttttg
cctagagagcctatgaactccgacaatgccattaaacttccaagcctacaagaactcgaa
acctatgcacttaagcaatgggagtgtttcttgctacaacttataaattcgggtcaaggt
gaaaaactaactggcatcagttcatccatgatgaaaatttttcagcgaggtttattgagt
cagagagacaaagatggcccgagattaactgagagtggctttcagtttttgctgatggat
acaaatgcccagctttggtacattattcgagaatacatattgaatgccgaggagcgagat
gtagatccagcagacttgatttcgtttttgttggagcttagttttcatgttactggtcag
gcatataacttaaataccttgacagaggttcaaaacaataccctcaaggaccttgcagac
ttgggattagtcaagcttcaacagggaaggaaagacagttggtttattcctactaaactg
gctacaaatttatcagtcagtctggcagattcatcagcgcgaaaagagggatttgtcgtg
atggaaacaaacttcagaatgtatgcgtactccacatctaagttacagtgtgaaatttta
cgactatttgcgaggatagagtaccaacttccaaaccttattgcttgtgccattacaaag
gaaagtttgtacaatgcatttgacaatggcatcacatcagatcagattataactttcctc
cagcagaattctcatccacgatgtgctgatcgagtcccatctattccagaaaatgtcact
gatcagattcggctttgggagacagatctgcagagaattgagatgacccaggctcacttc
tatgatgaatttccttcaaaagatgtgtttgaggcagcttgtgactttgctcgggaatgg
agaggccttctttgggaagactctaagagaatgcgacttgttgtgaaatccgaagttcac
aatcagatgcgtgagtttcttcatacccaaagcaggtaa
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