Arabidopsis thaliana (thale cress): AT5G43620
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Entry
AT5G43620 CDS
T00041
Name
(RefSeq) Pre-mRNA cleavage complex II
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AT5G43620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ath03021
]
AT5G43620
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G43620
Transcription machinery [BR:
ath03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
AT5G43620
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
AT5G43620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
834382
NCBI-ProteinID:
NP_199175
TAIR:
AT5G43620
UniProt:
Q9FIX8
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Position
5:17522486..17524003
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AA seq
410 aa
AA seq
DB search
MASNGSFSAQRNANAGTTMKRRNDNRGYGGGIGCYQEERNRYAPPQKRFRSQLQQQFRSG
HNPLYHYGSNTNNNVSRVSSQSYNNYGVDVIASNSSFALPNNDSNTNNYQKPFVVYGNPN
PQIVPLPLPYRKLDPLDSLPQWVPNSTPNYPVRSSNFVPNTPDFTNVQNPMNHSNMVSVV
SQSMHQPIVLSKELTDLLSLLNNEKEKKTSEASNNDSLPVGLSFDNPSSLNVRHESVIKS
LYSDMPRQCTSCGVRFKCQEEHSKHMDWHVRKNRSVKTTTRLGQQPKKSRGWLASASLWL
CAPTGGGTVEVASFGGGEMQKKNEKDQVQKQHMVPADEDQKNCALCVEPFEEFFSHEADD
WMYKDAVYLTKNGRIVHVKCMPEPRPAKDLREPSRVMSVTVPSVAKAILC
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaacggatccttctctgctcagagaaacgcaaacgctggaacaacgatgaag
agacgaaacgacaatcgcggttacggtggcggaatcggatgttatcaagaggagaggaac
cgttacgcgccgccgcaaaaacgtttcagatcgcaactgcaacagcaattccgatctggt
cataatcctctgtatcattatggtagtaatactaataataacgtgtctagggtttcttct
cagtcatataacaattacggtgttgatgtgattgcttctaattcaagttttgctttacct
aacaatgattctaacaccaacaattatcagaaaccctttgttgtttatggaaaccctaat
ccccaaattgttcctcttccattaccttatcgtaagcttgatcctttagattcgttgcct
caatgggttccaaattcaactccgaattatcctgttaggtcatcgaattttgtaccaaac
acacctgattttacgaatgttcaaaatccgatgaatcattcgaacatggtttcagttgtg
tctcaatcgatgcatcaaccaattgttttaagcaaagaattgactgatttgcttagtctt
cttaacaatgagaaagagaagaaaacttcagaagcaagtaataatgattcattgcctgtt
ggattaagctttgacaatccatcatcgcttaatgttcgacatgaatctgtgattaagtct
ctgtattctgatatgccgaggcaatgtacttcgtgtggggtgagattcaaatgtcaagaa
gagcatagtaaacatatggattggcacgtaaggaagaacaggtcggtgaaaaccactaca
agacttggtcagcaaccgaagaaatcgaggggatggttagcgagtgcatctttatggctt
tgtgcaccaacgggaggagggaccgtagaagtagcatcttttggaggaggagaaatgcag
aagaagaatgaaaaggatcaagtacaaaaacaacacatggtgcctgcggatgaagatcag
aagaattgcgcgttatgcgtagagccgtttgaagagttctttagccatgaagctgatgac
tggatgtacaaagatgcagtctacttaaccaagaatggtcgtatagttcatgttaagtgt
atgcctgaaccccgacctgctaaggatttgagagagccgtcgagggtaatgtctgttaca
gttccatcggttgcgaaagctatactctgctga
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