Actinomarinicola tropica: GH723_15410
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Entry
GH723_15410 CDS
T06914
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
atq
Actinomarinicola tropica
Pathway
atq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GH723_15410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atq03400
]
GH723_15410
Enzymes [BR:
atq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GH723_15410
DNA repair and recombination proteins [BR:
atq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GH723_15410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QGG97150
UniProt:
A0A5Q2RTA7
LinkDB
All DBs
Position
complement(3155438..3156394)
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AA seq
318 aa
AA seq
DB search
MPRSLSPMLATLSKRAPTAPDGPATGEWVYERKLDGQRILAYCEGADVRLRSRTDKSADG
AYPEIVDALHDQVASDCLLDGEVVAFDGPTTSFSRLQGRMGQHDPVLSRRSGIPVFFYVF
DIVHLDGIDLTGLPLRRRKSLIRAAVRAGGPIRLSPHRRDGVALFEEACAKGWEGVIAKR
IDSTYQPRRSTAWLKHKCEAGQELVIGGWTEPRGSRSELGAILVGHFEGDELVYAGKVGT
GFDERTLRALGRQLRARARADAPFRPHPLLPRRDVHWVEPDLVCQVGFAEWTGDGLLRHP
RYQGLRDDKPAREVVRER
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgccccgctccctcagccccatgctggccaccctcagcaagagggcgccgaccgcaccg
gacggcccggccacgggggagtgggtgtacgagcgcaagctcgacggtcagcggatcctc
gcctactgcgagggcgccgacgtgcgcctccggtcccgcaccgacaagtcggccgacggc
gcgtacccagagatcgtcgacgcgctccacgaccaggtcgcgagcgactgcctcctcgac
ggggaggtggtggcgttcgacggcccgacgacgtcgttctcgcgactccaggggcggatg
ggccagcacgatcccgtgctctcgcgccgctcgggcatcccggtgttcttctacgtcttc
gacatcgtgcacctcgacggcatcgacctcaccggcctgcccctccgtcgccgcaagtcg
ctcatccgtgccgcggtgcgcgccggaggtccgatccggctctcgccacaccgccgtgac
ggggtggcgctcttcgaggaggcgtgcgcgaagggctgggagggcgtcatcgccaagcgg
atcgactcgacgtaccagccgcgccggtccaccgcctggctgaagcacaagtgcgaggcg
ggccaggagctggtcatcggcgggtggaccgagccgcggggctcacgcagcgagctgggc
gcgatcctcgtcgggcacttcgagggggacgagctcgtgtacgccgggaaggtcggcacc
ggcttcgacgagaggaccctgcgcgccctcggccgtcagctgcgcgctcgggcccgtgcg
gacgcgccgttccggccccaccctctgctgccccgccgcgacgtgcactgggtcgagccc
gacctcgtctgccaggtggggttcgcggagtggaccggcgacggcctcctccgccacccc
cgctaccagggcctccgggacgacaagccggcgcgggaggtcgtgcgggaacgctga
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