Amborella trichopoda: 18423104
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Entry
18423104 CDS
T02990
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
atr
Amborella trichopoda
Pathway
atr03022
Basal transcription factors
atr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
18423104
09124 Replication and repair
03420 Nucleotide excision repair
18423104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atr03021
]
18423104
03400 DNA repair and recombination proteins [BR:
atr03400
]
18423104
Transcription machinery [BR:
atr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
18423104
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
18423104
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
18423104
NCBI-ProteinID:
XP_011625495
LinkDB
All DBs
Position
Unknown
AA seq
451 aa
AA seq
DB search
MPQVKIVPKNFMDMVAALPASKLDSLYTNTFFCEAVLRSLPPVSKMYVLRMLYIDAAVSA
KLMQEWVLPDSFSKHKAAIDRLLQLRVFTESIDRKREISYRLNPKYQENLRKYLVHGGTL
SREPMPSSVTVRLPTLEELDAYALQQWECFLLQLINSSLVERPTNFSPSMMKVFQRGLIT
TRDNEAPKLTENGFRFLLMETHTQLWYIMREYISTSEGRGMDTAELISFLLELSFHVTGE
AYNMNTLTEVQQIAIKDLATLGLVKLQQGRKESWFIPTKLATNLSVSLSDSSSRKEGFVV
VETNFRLYAYSTSKLHCEILRLFCRIEYQLPNLIVGAITKESLYTAFDNGITSEQIILFL
QQHAHPRVAQKAPAVPENVTDQIRLWETDLNRVEMNLAHFYEDFPSMDIYEAACDYAREL
GGFLWEDSKKMRLIVRGEMHEEMKDFLRRQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggttaagatcgtccctaagaacttcatggacatggtggccgcccttcctgct
tcgaagcttgatagtctttatactaacactttcttttgtgaagccgttctaaggtctttg
ccaccagtctccaagatgtatgttttgagaatgttgtatattgacgctgcagtaagtgcc
aagttaatgcaagaatgggtacttccagatagtttctcaaaacataaagctgcaattgat
cggttattacagttgagagtattcactgaatccattgacaggaaaagggaaatcagttat
agactaaatcccaagtatcaagagaatcttcggaaatacttggtacatggtgggactttg
tcaagagagccgatgccttcgagtgttactgtgaggctcccaaccctggaggagctagat
gcatatgcccttcagcaatgggagtgtttcttgctgcagcttatcaattcatctttagta
gaaaggccaacaaacttcagcccttcaatgatgaaagtttttcagcgtggtcttataact
acaagagacaatgaagctccaaaattaactgagaatggcttccgatttttgttaatggag
acccatacccaactctggtacatcatgagagagtatatttcgacttctgagggacggggc
atggatacagcagagctaatttcatttttattggaactcagtttccatgtaacaggagag
gcatataacatgaacactttgacagaagtgcaacaaatagcaataaaggaccttgctact
ctgggtttggttaaacttcagcagggaaggaaagaaagttggttcattcccacaaagctg
gctactaatctatctgtcagtttatctgattcatcatcacgaaaagagggctttgtggtt
gtggagacaaattttagattgtatgcatattcaacatctaaattgcattgtgaaatcctt
cgtcttttttgtcggatagaatatcagcttcccaatcttatagttggagcaataaccaaa
gagagcctttatactgcttttgacaatggcataacttcagaacagataatattgtttctt
caacaacatgctcatccccgtgttgcacaaaaagcacctgcagtgcctgagaatgttacg
gatcagattaggttatgggaaactgatctgaacagagttgagatgaatctggctcatttc
tatgaagattttccttcaatggacatatatgaagctgcatgtgattatgcaagggagttg
ggagggttcctttgggaagattccaagaagatgcgtctcatcgttcgtggtgaaatgcat
gaggaaatgaaggatttcctccgaagacaaaaataa
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integrated database retrieval system
