Amborella trichopoda: 18430196
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Entry
18430196 CDS
T02990
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
atr
Amborella trichopoda
Pathway
atr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
18430196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18430196
03036 Chromosome and associated proteins [BR:
atr03036
]
18430196
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
18430196
Chromosome and associated proteins [BR:
atr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
18430196
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
18430196
NCBI-ProteinID:
XP_011621883
LinkDB
All DBs
Position
Unknown
AA seq
1074 aa
AA seq
DB search
MFGSTNPFGQSSSSPFGSPSVFGQPTNANNNPFAPKPFGSPTPFGSQTGSSIFGGTSTGV
FGATQPSSPLGSTPAFGASSTPAFGASSTPAFGSSTPAFGATSTPAFGAGSSSAFGGSSI
FGQKPAFGGFGSSPSQTSPFGGAFQQTQPAFGSTLFGSTSPFGASSQPAFGATGTPGFGS
TTTPAFGSTTTPAFGASSTPAFGVSSSPAFGASSAPAFGASSTPVFGGSSIPAFGTSSTP
AFGASSTPAFGASSTPAFGASSTPSFGFGSTPAFGQTTSTFGSAPFGTTPTSFGAQSSPF
GAQTSTPTFGSPGFGQTAFGGQRGGSRVAPYVPTPEVDGGVAGAAPGKLESISAMPVYKD
KSHEELRWEDYQLGDKGGPSPAGQPAGGLFGQPSQPSPFGGGAFGQTAPNPFSSSTSSNI
FAPKTHSFGTTGFGAPSTSAFSSPFGASSSSPFGSTSSAPSLFGSSTTPAFGATSSPFNV
SSTPGFGSSSPSIFGSAPASGSTPGFGSGMNFGNTQSSGLFSSTPSFGQTTPGAFGQQPT
PGFGQTASTFGQTTGFGQSSPAFGQANLFGAPSTGFGGGLFSGSTPPMLSKRGGFGQTTP
SIFGGVQPSAPAQTSGAFSFGNFGQTQPAASSGFGAVSSTFGQSTLGQPAATQSVMVMQP
VPVTNPFGTLPAMPQMSIGRSGSAPSVQYGISSMPVADKPIPVRISSLLTSRHVSQRSRI
NLQSRRYHPKKDGPMVSYFSDSEETPSTPKADALFVPRENPRALFIHPTEQFPSNRYSQK
NMLKDSPNGKIPDEGPSAPHLEESPIQDNGKASVENGTDGGEPSFPSSPYQNGHHDEIRN
NKATTTNGYISISGHRAGEAAIAYEHGADIEALMPKLRHPDYYTEPKIQELAAKERAEPG
FCRKVKDFVVGRKGYGWIRFFGETDVRGLDLESIVQFNKCEVVVYMDESKKPPVGLGLNK
PAEITLLNVRCMDKKTGRQFTEGPEIEKYKKMLAKKTEEQGAEFVTFDAEKGEWKFRVKH
FSRYSLCGDVEVEGYVWVVHNAELRACVEDGLEMLAYLELEAEMLAVVKLGVDL
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgtttggatcgactaatccatttgggcagtcatctagtagcccttttgggagcccatct
gtgttcgggcagcccacaaatgcgaataacaatccttttgctcccaaaccctttggaagc
ccaacgccatttgggtcccaaacagggagctctatatttggggggacttcaactggtgta
ttcggggctacacagccttcttcacctttaggttctactccagccttcggtgcttcatct
acaccagcgtttggtgcttcctctacaccggcctttggcagttcaacgccagcatttggg
gctacttctactcctgcctttggtgctggttcctcctctgcctttggtgggtcatcaatt
tttgggcagaaacctgccttcggcggctttggatcaagtcctagtcaaacaagccctttt
ggtggtgcatttcaacaaactcaaccagcttttggaagtactctatttggatcaacatca
ccttttggtgcatccagccaacctgcatttggtgctacaggcacaccgggctttggttcg
acaaccacaccagcttttggatccacaacaactccggcatttggagcctcaagtacccca
gcttttggtgtttcgagttcccctgcatttggtgcttcaagtgccccagcatttggtgca
tcgagcaccccggtttttggtggttcgagcattccagcttttggcacttcgagcacacct
gcttttggcgcttcaagcacacctgcttttggagcttcaagcacacctgcatttggtgct
tcaagtaccccttcctttggttttggttccactccagcctttggccagactacatctacg
tttgggagcgcgccatttggaaccacaccaacctcttttggtgctcagagttcacctttt
ggggcccagacttcaacacctacatttggtagtccaggttttggacaaacagctttcgga
ggccaacgtggtggaagtagagttgcaccttacgttcccactcctgaagttgatggtggc
gttgctggagcggcccctggaaagctggaatcaatatctgccatgcctgtgtataaagat
aagagccatgaggaattgagatgggaagattaccagttgggagataaagggggaccaagc
cctgccggtcagcccgctggtggtctctttggtcagccatcccagccaagcccttttggt
ggaggtgcctttggtcagacagctcccaatcccttctcgtcttccacttcctccaatatc
tttgctccaaaaactcattcttttggtaccactggttttggggcaccatccacttcagca
ttcagcagtccttttggtgcatcatcatcgagtccttttgggtccacttcatctgctcca
tctctttttgggtcatccactacacctgcatttggggctacgtcatctcctttcaatgta
tctagcacacccggttttggatcatcttctccctccatctttggttcggctccagcatcg
ggttcaactccgggatttgggtctggcatgaattttggtaacacccaatcatcgggttta
ttttcttcaactccttcatttggacaaacaactcctggtgcttttgggcagcagccgacc
cccggttttgggcaaacggcttcgacatttggacagactactggatttggccaaagtagc
ccggcatttgggcaggccaatttatttggggcgccttccactgggtttggaggaggtcta
tttagtggttcgacaccaccaatgctgtcgaagcgtggtggatttggtcaaactacgcct
tcaatttttggtggagtgcagccctctgcacctgcacagacttcaggtgcattttctttt
ggcaactttggtcagacacaaccagcagcttcaagtggttttggtgctgtatcaagtact
ttcggtcaatctacccttgggcaacctgctgctactcagagcgtcatggtcatgcaacct
gttcctgttacgaatccttttggaactctacctgcaatgcctcagatgtcaattgggcgt
agtggctctgccccctcggtgcaatatgggatttcaagcatgcctgtcgccgacaagcca
attcctgtcaggatctcctctttgttgacttctcgacatgtctcccagagatcgaggatt
aacttgcagtcaagaagatatcatccgaaaaaggatggtcccatggtatcatacttcagt
gatagtgaggaaacgcctagcacaccaaaagcagatgctctttttgttccaagagagaat
ccaagagcactgttcatccatcctacggaacagtttccatccaaccgatattcccaaaag
aatatgttgaaggacagccctaatggtaagataccagatgaagggccttcagctccccat
ttggaggagtctcctattcaagacaatggaaaagcctctgtggaaaacggcacggatggt
ggtgagcccagcttcccatcctccccatatcaaaacggccaccatgacgaaatccgcaac
aacaaggccaccaccaccaatgggtacatctcaatttcgggtcaccgagccggtgaggca
gccattgcatacgagcatggtgctgatattgaggccctcatgccaaagcttcgacacccc
gattactacactgaacccaaaatccaagagcttgcggccaaagagcgggcggaacctggt
ttttgccgaaaagtaaaggactttgtggtgggtcggaaaggctatggttggatccgcttc
tttggtgaaaccgatgttcgtggccttgacctcgagtccattgttcagttcaataagtgt
gaggtagtggtttatatggatgagagtaagaagccacctgtgggcttgggccttaacaag
ccagctgagattactttgcttaatgtgcggtgcatggataagaagactggccggcagttc
actgaaggacctgaaattgagaagtataagaaaatgcttgcgaagaagacagaggagcaa
ggggctgagtttgtgacttttgatgcggagaagggggagtggaagttcagggtcaagcac
tttagcaggtattccctttgtggggatgttgaggtcgaggggtatgtgtgggttgtgcat
aatgccgagctgcgtgcttgtgtggaggacggcctcgaaatgcttgcatacttggagctt
gaagctgagatgcttgcagttgtgaaacttggggtggatctatag
DBGET
integrated database retrieval system
