Amborella trichopoda: 18438029
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Entry
18438029 CDS
T02990
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
atr
Amborella trichopoda
Pathway
atr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
18438029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atr03032
]
18438029
03400 DNA repair and recombination proteins [BR:
atr03400
]
18438029
DNA replication proteins [BR:
atr03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
18438029
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
18438029
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
18438029
NCBI-ProteinID:
XP_020525410
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MAFKGKTVFLSRSLVAPEIFDTIHDALKLNSAQICLCCDPSRSAPNEYHVISSPDHEKFE
LLRANGCNLLGPECIISCAKDQRSLPKQGYTCCLAMDGVKVLASGFDMEEKVKFEKLVIA
MGGVFHTKTSLDISFTIVKNVLAAKYKWALSTLKKPIVTINWLYQCWKEHRIVPHETYRI
PPFTGLIVCATKISADERKEMEKLIAQNGGQYSPDLTKKCTHLISNIPEGDKYRVAKTWG
HIRIVNKKWLQQSIAARACLDEDFYPVQGARVSSSNTSKGGQKQKDSTEKVTSLSLPSTV
PLSLQSNLSQSISNAVSDSYVSVTEEIEKPTLQAADESKSHNVVAEDSQAEDDDLYLAEC
RILLVGFQFAEMRNLVNMVHKGGGSRYMSFNEKLTHIIVGMPSDVERKEIRRLASWGVIN
VVSSIWLEDCTREKKEVDVTLRHKVTDSSLSQDELNMSRVADIKHKQSCRTAMGLEFEKA
PSEQGDSLQGNANMSREEGGLLKTSLKPSKTTNENARTKQNNGLNAVNNDPVSRHKSKRE
LEPVFDKDRKPSNIFGGRKFCFSESFPQDRRAEIVGWVIHGGGLIVDDQGSENVDFVIEC
HGVVDGQSDRCHSILVSSHWIRSCLEEGVMPDVGSHILYSPLPCRVPLPGFEGIRFCISQ
YEVKERLLLRNLCFILGAKFSEKLSRKTTHLICKFASGVKYEASSMWGIEPVTAEWITEC
IRQDKMVPLNAFRPKVVTSQDKDAGLCTTTQYSTQAAPLIPGELPSQWISDAQGPLKPLK
PNEANRSGFWIQSDSHMAEAEQSNSFFKKPRQAEHAVDREPLTSDTSSHYKFPSEKLQTS
SSVLEDDIKDSDAFTDVAATIEGWLEKSSKNRSMKSPEGTGCDQNMQLFSPERLMIRESP
ADAPSSFGISKPWLSNSEKHGPHNQFGRDERKQGLCDGFSESQMESQVVGYEEDLTGRQM
IIDRVRTRSMSLNTQREQGQERMNSSLGRLLKVAEENK
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaaagggaagacagtgttcctttcccgaagtctggtggctccggagattttt
gacaccatccacgatgccctgaaactcaactccgctcaaatctgcctctgctgtgaccct
tccagatccgctcccaacgagtaccatgtcatctcctctcctgatcatgagaaattcgag
cttctcagggccaatggttgcaatttacttggccccgaatgcattatttcctgtgcaaag
gatcaaagaagtttgcccaaacagggctatacctgttgccttgcgatggatggtgtgaaa
gtgctcgcatctggatttgatatggaagagaaggttaaatttgagaagctggtgattgca
atgggtggagtatttcataccaagacctcccttgatattagcttcacgattgtgaagaat
gtattggctgcaaaatataagtgggctttgagcacattgaagaaacccattgtaaccata
aactggctatatcaatgctggaaggagcatcgcattgtcccgcatgaaacatatagaatt
ccgccttttactggtttgatcgtttgtgcaaccaaaatctcagcagatgaacgtaaggag
atggaaaagcttattgctcagaatggtggacagtattctcctgacctgaccaagaagtgt
acgcatttaatatctaatataccagaaggtgataaatatcgggttgccaaaacttggggc
catatacgaattgttaataaaaaatggctccagcaatctattgctgcaagagcctgccta
gatgaagacttttatcctgtacaaggagcgagagtttcttctagtaatacttcaaaaggt
ggtcaaaaacaaaaagatagcacagagaaggttacttctctatccctaccttcaacagtg
cctcttagtctacagagtaacctgtcccagagcatatccaatgcagtttcagattcttat
gttagtgtgacagaagaaatagagaaaccaaccttacaagctgcagacgaatccaagtct
cacaatgttgttgctgaggacagtcaagctgaggatgatgacctctatttagcagaatgc
agaattttacttgtaggttttcagtttgctgaaatgcggaatctagtaaatatggtgcat
aaaggtggaggttctcggtacatgtcattcaatgaaaagctgacacacataatagtagga
atgccttctgatgttgaaaggaaggagattcgacggcttgcatcatggggtgtaatcaat
gttgtaagctccatctggttggaggattgcactcgtgaaaagaaagaagtcgacgtgacc
ttgagacataaagtaactgattcatctctttcgcaggatgaattgaacatgtcaagagtt
gctgatataaagcataaacaaagctgccgaactgcaatgggccttgaattcgaaaaggca
cctagtgagcaaggagattcattgcagggcaatgctaatatgtccagagaagaaggggga
ctgttaaagacaagcttgaagcccagcaaaacaacaaatgaaaatgccagaactaagcag
aataatgggttgaatgctgtaaataatgatcctgtaagtaggcacaaatcaaaacgtgaa
ttggaaccagtgtttgacaaggatagaaagccatcaaacatttttggaggccgaaagttc
tgtttttctgaatcttttccccaagaccggagagcagaaattgttggctgggtcatccat
ggaggaggattgatagtggatgatcaaggatcggaaaatgttgactttgtcatagaatgt
catggtgtggtcgacggccagtctgatcgttgccattctattcttgtttccagtcattgg
attcgatcttgcttagaggagggcgtgatgccagatgttggaagtcacattctatactcg
ccattaccatgccgggtacctctacctggctttgagggaattcgattttgcatctcccaa
tatgaggtcaaagagagactgttattaaggaatttgtgcttcattcttggagccaaattt
tcagaaaaactgagcagaaagacaacacatctaatatgcaagtttgctagtggggtaaaa
tatgaggcttcctccatgtggggtatagaaccagtaaccgcggaatggatcacagaatgc
atcaggcaggacaaaatggttcctctcaatgcatttcgaccaaaagtggttacttcccag
gacaaagatgcaggtttatgcacaacaactcagtattctacacaagcagctcctttgata
cctggagagcttccatcccagtggattagtgatgctcagggtccactgaagccattgaaa
ccaaatgaagctaatagatcaggtttttggattcaaagtgatagccacatggcagaagct
gaacagtcaaactcttttttcaaaaagccgaggcaggcagagcatgctgtggatagggaa
ccacttacttcagacacatcgtctcactacaaatttccttctgagaagctgcaaacttct
agtagtgttctggaagatgacattaaagattctgatgcctttactgatgtcgcagctact
attgagggctggttagagaaatcaagcaagaatcgaagtatgaagtccccagagggaaca
ggttgtgaccaaaatatgcagctcttttcacccgaacgtttgatgatacgtgaaagtcca
gcagatgctccctcttcttttggtatatccaagccttggttgagcaattctgagaaacat
ggtcctcacaatcaatttggtcgtgatgaaagaaagcaagggttatgtgatggttttagt
gaatcacaaatggaatctcaggttgtggggtatgaagaagatctgaccggaaggcagatg
ataatagacagagtgaggacacggagcatgtcactaaatacacaaagagagcaaggacag
gaacggatgaatagtagcctcgggcgcctccttaaagttgccgaagagaacaaatag
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