Amborella trichopoda: 18446507
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Entry
18446507 CDS
T02990
Name
(RefSeq) N-glycosylase/DNA lyase OGG1 isoform X1
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
atr
Amborella trichopoda
Pathway
atr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
18446507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atr03400
]
18446507
Enzymes [BR:
atr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
18446507
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
18446507
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
HHH
RecR_HhH
Motif
Other DBs
NCBI-GeneID:
18446507
NCBI-ProteinID:
XP_006856686
UniProt:
U5DCM7
LinkDB
All DBs
Position
Unknown
AA seq
381 aa
AA seq
DB search
MLRRRQTPIPPIQKLSKSSSSLPSSSKTRRPLLFLKPTVSSPDGEWKPLLNMGISELSLP
LTFPTGQTFTWKQTASTQFTGVLNSHLLSLRQLQDGSISYLLHRTCFSSPSLSKDEAFAM
DSLKDFMNLQVSLGELWAEFSEADSRFAELAPHMSGARVLRQDPLECLFQFLCSSNNNIP
RITQMVSYLSSLGPYLASVGGFKFHAFPSLERLSQVSEEELRKAGFGYRAKYIVDAVAVL
QSKPGGGAEWLLSLRTLELQEVTDALLGLPGVGPKVAACVALFSLDQHHAIPVDTHVWQI
AKRYISPELEGATLTPKLSRHVAEAFVMKFGKYAGWAQTVLFIGELSSQKALLPVHLHCD
KATEASSKKLVTSKNKRKSRA
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggaggcggcaaaccccaatccctcccatccaaaaactctcgaaatcatcctcc
tctctgccttcgtcctctaaaaccagaagaccccttctctttctcaaacccactgtctct
tcacccgatggagaatggaagcccctcctcaacatgggcatctcggagctctctctgcct
ctaaccttccctacgggtcagaccttcacatggaagcaaacggcctcaacacaattcaca
ggtgtcctcaattcacaccttctctctcttcgccagctccaagatggctccatctcctat
ctcctccaccgcacttgtttctcttctccctctctttcgaaggatgaggcctttgcaatg
gattctctcaaagactttatgaaccttcaggtttctctgggagagctttgggctgagttt
tcagaggcggattccagatttgcggagctcgctccccatatgtctggggctcgggtgctg
agacaggacccattggagtgccttttccagtttctttgttcgtccaataacaacataccg
aggattacacagatggtatcatatctgtcttcacttggcccttacttggcctctgttggt
gggtttaaattccatgcatttccttcactggagcggctgtcgcaggtttcggaggaggag
ctgcgcaaggctgggtttggttacagggccaagtatatagtggatgcagttgcagtccta
caatcgaaacctggaggaggtgcagagtggttgctgtccctccgcactttggagctccaa
gaggtaaccgatgcactattgggcttgccaggagttgggccaaaggtggcagcctgtgtt
gccctattttctctcgatcaacaccacgccattcctgttgatacccatgtctggcagata
gcaaaaaggtacataagtcctgagttggaaggtgcaacattgacgcccaaattgtctcgt
catgtggctgaggcctttgtgatgaaatttgggaagtatgcaggttgggcacaaactgta
cttttcattggagaattatcgtctcagaaggccttgttacctgtgcatttgcattgtgat
aaagccactgaggcgtcctctaagaagcttgtgactagcaagaacaagaggaaatctcgt
gcttga
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