KEGG T09957: 106134339

Amyelois transitella (navel orangeworm): 106134339

Entry

106134339         CDS       T09957

Name

(RefSeq) probable ATP-dependent RNA helicase DDX46

K12811

ATP-dependent RNA helicase DDX46/PRP5 [EC:5.6.2.7]

Organism

atra Amyelois transitella (navel orangeworm)

Pathway

atra03040

Spliceosome

Brite

KEGG Orthology (KO) [BR:atra00001]
09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106134339
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atra03041]
    106134339
Enzymes [BR:atra01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     106134339
Spliceosome [BR:atra03041]
Complex A
  U2 snRNP components
   U2 related factors
    106134339
Complex B
    106134339

SSDB

Motif

Pfam:

DEAD Helicase_C CdAMP_rec

Other DBs

NCBI-GeneID:

106134339

NCBI-ProteinID:

XP_013189811

EnsemblRapid:

LOC106134339

LinkDB

Position

17:join(7206741..7206754,7206850..7207059,7207710..7207851,7213787..7213973,7214227..7214327,7214506..7214632,7215152..7215321,7215682..7215896,7216272..7216506,7216887..7217048,7217749..7217868,7218178..7218385,7219579..7219741,7220171..7220382,7221101..7221264,7221935..7222129,7222490..7222657,7224125..7224367)

AA seq 1011 aa
MVRSGRDRDRDRDRERRRSHSRSASPDRKRRRSRSRSRDRASKSSKRKRSRSRERDSKRD
RSRERDRDRERDRKSDKREDKRNGTSSKSSRKKSPDRERDRSKSKEKTIKTESDYDLGSA
DKEEEQSRLEQEMQKRRDRIERWRAERKRKELESAKKEVQKGSIVSNIQMPAKKWSLEDD
SGDEGEDGEAKEKPAPEEKKEEEDEIDPLDAYMQEVQQEVRKVNQIDQARGLISVPSGGG
TGVVILTGTAKKKVTEQKNKGELIEQNQDGLEYSSEEETEDIKDAAANLASKQRKELAKV
DHASLQYMPFRKAFYTEVSELARMTPEEVEAYRTELEGIRVKGKGCPKPIRTWAHCGISK
KELDILKKLGFEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHVLDQPPLE
DTDGPISLIMTPTRELCMQIGKDIKKFAKSLGLRVVCVYGGTGISEQIAELKRGAEMIVC
TPGRMIDMLAANSGRVTNLRRVTYIVLDEADRMFDMGFEPQVMKIIDNVRPDRQTVMFSA
TFPRQMEALARRILQKPIEIQVGGRSVVCKDVEQHCAILEEDAKFFKLLELLGLYSQMGS
IIVFVDKQENADSLLKDLMKASYPCMSLHGGIDQFDRDSTIVDFKNGKVKLLVATSVAAR
GLDVKQLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAWTFLTPEQGRYAGDVLRAFELA
GAAPPPELRALWERYKEAQEKDGKKVHTGGGFSGKGFKFDESEAQAATEKKKYQKAALGL
QDSDDEDVEGDLDQQIETMLAAKKIVKEIKPGVAGAAAAPAAGSAPGADGKLELARRLAS
RINLAKGLGGEQKGATQQAAEAILKGAPSAHTLITAKTVAEQLAAKLNTRLNYQPRDESN
AEPQEEVFRKYETELEINDFPQQARWRVTSKEALALISEYSEAGITVRGTYVPPGKTPPE
GERKLYLAIESSQELAVAKAKSEITRLIKEELLKLQTSAHHMVNKARYKVL

NT seq 3036 nt +upstreamnt +downstreamnt
atggttcgcagcgggcgtgatcgtgacagagatcgtgatcgcgaaaggagacgctcacac
agtagatcagcatctccggatcgtaagcggcgccgctctaggtctaggagtagagacaga
gcatcgaagtcttctaaaagaaagcgaagtcgtagtagggagagagactccaagagggac
cgtagtagagaacgagatagggatcgtgaaagagacagaaaaagtgataaaagggaggat
aagaggaatggaacaagtagtaaatcatcaagaaagaagtccccggaccgggagagagac
aggtctaagtcaaaggaaaagacaatcaagacagaatctgactatgatcttggatctgct
gataaggaagaagagcaaagtcgcctagagcaggaaatgcagaagcgtcgcgaccgcatt
gagcgctggcgagcggagcggaagcgtaaagagctagagtctgcaaagaaagaggtgcag
aaaggcagcatcgtcagcaacattcagatgccggcgaagaaatggtcgctagaggacgac
tcgggtgatgaaggtgaagatggagaagcaaaagagaaaccagcgcctgaagagaaaaaa
gaggaagaagatgaaatagacccattggatgcttacatgcaagaagtacaacaagaggta
cgcaaagtaaaccaaatagaccaagctcgtgggcttatcagtgtgccatctggcggtggg
accggtgtggtcatactaacgggaacagccaaaaagaaggtcacggaacagaaaaataaa
ggcgagctgatagaacagaaccaagatgggttggagtattcttctgaagaagaaactgag
gatatcaaagacgccgcagccaacctggcttctaagcagcggaaagagctcgccaaagtc
gaccacgccagtcttcagtacatgcctttcaggaaagctttctacaccgaggtgagcgaa
cttgcaagaatgactccagaagaggtggaggcataccgaaccgaactggaaggaatccgg
gtgaaaggcaagggttgtccgaagccgattcggacgtgggctcattgcggcatcagcaag
aaggagctggatatattgaagaagttgggctttgagaaacccacgcctatccaggctcag
gcgataccggctattatgtcgggaagggacctcatcggcatagcaaaaacgggttcaggc
aaaaccctagcgttcatcttgccgatgttccgccacgtactggaccagccgcctctagaa
gacacagacggaccaatctctctcatcatgactcctacaagagaactgtgtatgcagatc
ggaaaagatataaagaaattcgccaaatcgttgggcttgagagttgtttgtgtgtacggt
ggcactgggatttctgaacagatagcggaactaaagcgaggtgcggagatgatagtgtgc
accccgggccgtatgatcgacatgttggccgccaactccggccgcgtcaccaaccttcgc
cgcgtcacttatatagtgttggacgaagcagacagaatgtttgacatgggctttgaacct
caggtgatgaaaataattgacaacgtaaggccagacagacaaaccgtcatgttcagcgcc
accttcccgcggcaaatggaggcgctcgcgcggcggatactgcagaaacctatagaaata
caggtcggcggcagaagcgtagtctgcaaagacgtggaacagcactgcgccatcttagaa
gaagatgcgaaattcttcaaactcctagagttgctcggcctctacagccagatgggaagc
atcatagtgttcgtggataaacaagagaatgccgatagtctactgaaagacctcatgaag
gcttcgtacccctgcatgagtttgcatggaggtattgatcaattcgacagggactcgacg
attgtggacttcaagaatggcaaggtgaagctactggtggctaccagcgtggcggccagg
ggattggatgtcaaacagctggtgctagtagtcaactatgactgtccgaatcattacgag
gattatgtgcatagatgcggtcgaaccgggcgtgcgggtaacaaaggttacgcctggacg
ttcctgacgccggagcagggccgctacgccggcgacgtgctgcgcgccttcgagctggcg
ggcgcggcgccgccgcccgagctccgggctctgtgggagcggtacaaggaggcgcaggag
aaggacggcaagaaggtgcataccggcggcggatttagtgggaaaggtttcaagtttgac
gaatcagaagcgcaagcggcgactgagaagaagaagtatcaaaaagcggcgctcgggctc
caggactccgacgacgaggacgtggagggcgaccttgaccagcagatcgagaccatgctg
gctgccaagaagatcgtcaaagagattaagccgggtgtagcaggcgcagcagccgcgccg
gccgccggcagcgccccgggcgcggacggcaagctggagctggcgcggagactggcgagc
cgcatcaacctcgccaaggggctcggcggcgagcagaagggcgccacgcagcaggccgcg
gaggccatactgaagggggcgccttcagctcacactctcatcactgctaaaaccgtagca
gagcagttagcggccaaactgaacacacgtctgaactaccagccacgcgacgagagcaac
gcggagccgcaagaagaagtatttaggaaatacgagaccgaattggagattaacgacttc
cctcagcaagcccgctggagggtcactagcaaggaggcgctagccctgatcagcgaatac
agtgaggctggtataaccgtccgtggtacttacgtaccgccaggtaaaactcctccagaa
ggcgaaaggaaactttacctcgctatagaaagctctcaagagttagctgtggcgaaggca
aagtcggaaatcacacgcctcatcaaagaagagcttctgaagctacagacctccgctcat
cacatggtcaacaaggctagatataaggtcctttaa

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