| Entry |
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| Name |
(RefSeq) THO complex subunit 1
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| KO |
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| Organism |
atra Amyelois transitella (navel orangeworm)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:atra00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106136706
09122 Translation
03013 Nucleocytoplasmic transport
106136706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:atra03019]
106136706
03041 Spliceosome [BR:atra03041]
106136706
Messenger RNA biogenesis [BR:atra03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
106136706
Spliceosome [BR:atra03041]
Complex C
Other components
EJC/TREX
106136706
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106136706
|
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
11:join(8757050..8757094,8757196..8757873,8758257..8758513,8758850..8759022,8759331..8759460,8759693..8759778,8760101..8760264,8760524..8760610,8761112..8761192,8761512..8761695,8762248..8762381)
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| AA seq |
672 aa
MSDRNGFEELRAKYKDVLSKAFTTNNIDLLDSFSKNTNETDRKAAMDQAFRDKLLELLVE
EPETLESYVCFCIESCRRHMVTPTMPVVLLGDIFDALTLNKCEQMFTYVESGVNIWKEDL
FFIACKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIVSEFNLENVT
EFGGDSSSTLKDSLDEEMVVDDEKSKLSIDYNLYCRFWSLQDFFRNPNTCYNKIQWKTFV
AHSGSVLSAFSSYKLEAVELQKSKMNRLKAVTDVEMHENKEQHYFAKFLTNQKLLELQLS
DSNFRRCVLIQFLILFQYLSSTVKFKMESQELKQDQAEWVKETMALVYKLLGETPPNGKK
FAECVKHILKREEHWNNWKNDGCPEFQKPKPPVQVDSTEEIKRASKRRRPVGDIIKEYEG
QNKHYMGNNELTKLWNLCPDNLTACRTKERDFMPSLESYMLTGVESESGRKRTSCGGWGW
RALRLLARRSPHFFVHTNNPIGRLPDYLDDMVERVTREVAANAAAANANGDGITDKSVKQ
EAAEEEISEEQIEADLIKEEDTADIEQVPDSTHAGEEDYDKTTRSRVTMITPTQLEAVSA
KLTDWKKLAAKLGYKTDEIQYFESENATDAARAKNMLQLWFDDDEDASVENLLYIMEGLE
LTEACEALKSVK |
|---|
| NT seq |
2019 nt +upstreamnt +downstreamnt
atgtcggatcgaaatggatttgaggaactgcgagcaaaatacaaggatgtcctatccaaa
gcatttacaacaaacaacatcgatttgctggattctttttcgaagaacactaatgagaca
gacagaaaagctgctatggaccaagctttcagggacaagctgctggaacttttggtcgag
gagccagagacgctcgaatcttacgtctgcttctgcatcgagtcatgtagacgacatatg
gtcacaccaacaatgcctgtagtacttttaggagatatatttgatgcattgacattgaat
aaatgcgagcagatgtttacatatgttgaaagtggagtgaatatatggaaagaggattta
ttttttatagcttgtaaaaataatttgcttcgtatgtgcaatgatctcttacggagatta
tcgagatctcaaaatacagtgttttgtggaagaatcttgcttttccttgccaaattcttc
ccattctctgaacgttcaggacttaatattgtgtcggaatttaatttggaaaatgttacg
gaatttggtggagacagttcgagtacattaaaagactcgctggatgaagaaatggttgta
gatgatgagaaaagcaagctgagtattgattacaatttgtactgcagattttggagtctc
caggacttttttaggaacccgaatacatgttacaacaagattcagtggaaaacatttgtt
gcgcattctggaagtgttctgtcagctttctcgtcatacaaactagaagctgttgagctt
cagaagtcaaagatgaaccgactgaaagcagtcaccgacgtggaaatgcacgagaacaaa
gaacagcactattttgccaagttccttaccaatcagaaactattggagctacaattgtcg
gattcgaacttccgaagatgtgtgctgatacagttcttgatattgttccagtatttatct
tctactgttaagtttaaaatggagtctcaagagctgaaacaagaccaagccgaatgggta
aaagagaccatggctctagtttacaaacttttgggagagaccccaccaaatggcaagaaa
tttgcagagtgcgtcaaacatatattgaagagggaagagcattggaataattggaaaaat
gatgggtgcccagaattccaaaaaccaaagccgccagtgcaagtggactcgacagaagag
atcaaacgggcgagcaaaaggaggcgccccgtcggagacatcataaaagagtatgaaggt
caaaacaaacactacatgggcaataatgaactgacaaaactgtggaatttatgcccagac
aacctgactgcatgccgcacaaaagagagggatttcatgccatcattagaatcctacatg
ctgaccggcgtagaaagtgagtcgggtcgcaagcgcacgtcgtgcggggggtggggatgg
cgagcgctgagactgctcgctcgtcggtcgccacacttctttgttcacaccaataatccg
atcgggcggttgccggactacctagacgatatggttgaacgcgtgactcgcgaagtagca
gcaaacgcggccgcagccaatgctaacggggacggaatcaccgataaatctgttaaacag
gaggccgccgaagaagaaatttcagaggaacaaatcgaagcggacctcataaaggaggaa
gatactgctgacattgaacaggtgccagactccacccacgcgggagaagaagactacgat
aagacaactaggtcccgcgtcaccatgatcacgccgactcaactagaggcagtctccgcc
aagctgactgactggaagaaactggccgccaaactggggtacaaaactgacgagatacag
tacttcgagagcgaaaacgctacagatgcggcaagggccaaaaatatgctgcaactttgg
ttcgatgacgacgaggacgcttctgtggagaatctgctctacatcatggaggggttggag
ctgacagaggcctgtgaggccttgaagagcgtcaaatga |
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