KEGG   Amyelois transitella (navel orangeworm): 106138874
Entry
106138874         CDS       T09957                                 
Name
(RefSeq) uncharacterized protein LOC106138874 isoform X1
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
atra  Amyelois transitella (navel orangeworm)
Pathway
atra03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:atra00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106138874
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:atra03021]
    106138874
   03019 Messenger RNA biogenesis [BR:atra03019]
    106138874
Transcription machinery [BR:atra03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     106138874
Messenger RNA biogenesis [BR:atra03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     106138874
SSDB
Motif
Pfam: CID Pcf11_helical CFIA_Pcf11 VHS zf_UBZ
Other DBs
NCBI-GeneID: 106138874
NCBI-ProteinID: XP_013195619
EnsemblRapid: LOC106138874
LinkDB
Position
21:complement(join(8661354..8661706,8662004..8662178,8662742..8662918,8663246..8663475,8664024..8664250,8664451..8664775,8665075..8666640,8666866..8667004,8667901..8668062,8668758..8668902,8669548..8669695,8672415..8673207,8673417..8673536,8676396..8676560,8677245..8677421,8677665..8677790,8678661..8678813))
AA seq 1726 aa
MSKEIAEEYASSLADLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEKVQPEIKLPV
LYLVDSIIKNVGRAYTQKFSQSIVNMFTRTFKQVDEKVRSQMFKLRETWNDVFPATKLYQ
LDVKVNLIDPAWPIQAQPQQLNIHVNPNFLKKPVATTSAAPTEDEEKMRTIVAKKEQELL
MLQRKKIEMELEQARRQLEITEKTTKVGAEAPPVAPSIPRALVNPVVAPVMPGAEAAPVP
VKQRLGPPVNKQSRIAPVSGALAAARRDPRLQRSRDPRAPPAPPAAPPPLPQPQPIAPNV
FDIKPLERVHKRKNVITIDVQPEMQPVIPIRPRDPRRRDPRLEKRDRTKPRKDERKREET
RRVEIENKEVTRPDPGPEFIIKIPDVKKISKLPPIPKISKTDDSNKESPKKRKDEREKKD
VRVEKKPRREGSSSGKDSSNSSSPEKRPKNKDKKRKEKVRQEDEKPGEGEVVAFKELKNY
HKEHYMRRNKEKSESPEKVTDTEDVPKTESSNVTEVAEKKDVDLRILPSVQVKPATVSHK
RPSTELLEGKAKKNKHDKFDILFGNEDVDLRQLPQVEEVTAPPPPTIKDSPKTEEKMDED
EPDASSAGMSRRGTKVTKEEDVDLRQLPQVEEPTTSKAVESPKQPQSENETEDVETTEMA
PNKDWHEVKEKCDDVKKAPSKLDLVRAKLAEATKVKDGLGRPLLFSKSPSVEKERRRTLS
SEDMDLRMDNPEDFDAEDNKKTISIIMNQAKEQYTDGHLDKNQYNALMYQVLQLNEKLKL
KEAKQRESLEQSKRKLKATIDNNKTASPESSPNERNNFGDIDERITPVIYLDTPPDSQQE
YLKDSDMRMSRPMDYDGNRQGMVPMPPRMPPFRPFNAERHPVWRGNRQRMEEFAPRRFRG
PNPAYFRGNRARPPFEPPRPLLPPLPTPQMGMCQSESPLVPYERSATPPPLGAPGIVIPP
TDYRILEYIDQDPVKTIQIDGIPREIRFYGETAVIMMDWDDPRELKFLPGSRRVTFDNKD
SVVLSFNEGYKQVEIDDQVFDMRFGAPTRELYINGRWFECFFGGQPLGVIIDGKPRLVHL
EGPLPQVDIGKTKRQDLVAGKINLIVNATHMCPVYLDAKVQKFQVNNQFFTIRFVDSLRT
VLINEQPFKVEFGDLPKPVTLGNEKYFIRFSALPKFIKPGHVRIANMEGSSLSLPLLEMP
VLGFEKIHDQNSMAVDQDASKLRKTPSPEGQGLDMLASVMPSSIAPASASEYSSAEPFFA
KPDKIPGLETGDEKPDPMNSLLSNMNVNDLFAKLVATGLVQVNQNKEEAKVEINPEKPKP
KEDRSVVHKVDLLRPETLKVKQPALVAKLYGGMQCSGCGARFPPEHTVRYSQHLDWHFRQ
NRRERDSARRAHSRHWHYDLSDWVQYEEVEDLEEREKSWFETNSSAPAPELQPESTEQAP
SVAAGALADAACALCGDKFDQFYNEDKEEWHLRNSVRHNELNYHPMCYEDYKASQAKEEP
ETEVIEEMPIDKIDPEDAIEIRDTDDINSQSDNESVVEVVEPPEVIPEAVEIDEGDEDDV
IYKAEPVEQVVVEDDADTDDETALSRAERDRQAAEMFMNIKIKQEPIDPDDEPIITAEEE
VPITIADTTRTTVTSSIDGNVQLEATPMPSVPPGGGIRINISKAPTFANNVPEPMLEDVS
ADDEPLPPGEEPQLEYKLKPSLEGIRFSRQPPTQRGVEMSGLCSIM
NT seq 5181 nt   +upstreamnt  +downstreamnt
atgtcaaaagaaatagcggaggagtacgcgtcgagtttggcggacctgaccgtcaacagc
aagcccctgatcaacatgcttacaattctcgctgaagagaacatcgagcatgctggggtt
atcgttgagaccgtggagaagcatttggagaaggtacagccagagatcaagctgcccgtt
ctgtatttagttgattccattatcaagaacgtcggccgagcgtacacacagaaattctct
caaagcattgtcaacatgtttacacggacatttaaacaggtggacgaaaaagtgaggtca
cagatgttcaaactccgcgaaacatggaacgatgtgttccccgccacaaagttgtaccag
ttggatgtgaaagtgaacttgatcgacccagcatggccgatccaggcgcagccgcagcag
ctaaacatccatgtaaatccaaattttctgaaaaagcccgtcgctacaaccagcgccgct
ccgacagaagatgaggagaagatgcgcacgatagtcgcgaagaaggaacaggagctgctc
atgctccagcggaagaagatagagatggaactggagcaggctaggaggcagctggagatc
acggagaagaccactaaagtgggcgcagaagccccgccggtggcgccgtctatccctcgc
gccctcgtcaacccggtggtggcgcccgtgatgcccggcgcggaggccgctcctgtgccc
gtcaagcagagactggggccgccggtcaacaaacaatctcgcatcgcacccgtcagcgga
gccctggcggccgcgcgccgcgacccgcgcctgcagcgcagccgcgacccgcgcgcgccg
cccgcgccccccgccgccccgccgccgctaccacaaccgcaacccatcgcgcccaacgtc
ttcgacatcaaaccgcttgaacgcgtccacaaacgcaagaacgtcataactatcgacgtc
caaccagaaatgcaacccgtcatcccgatccggccgcgagacccgagacgcagggatccg
cgcctcgagaaacgcgacaggaccaaaccgcgcaaggacgagcgcaagcgcgaggaaact
agacgcgtcgaaatagagaacaaggaggtgacgagacccgaccccggccccgaattcatt
atcaaaatacccgatgttaaaaaaattagcaaactcccgccgatacccaaaattagtaaa
accgacgactccaacaaagaatcgcctaaaaaaagaaaagatgagcgcgaaaagaaagac
gtgcgtgttgagaaaaaacctcggcgggagggcagcagtagtgggaaggattcgtctaac
agttcctcgcccgagaagcgtcctaagaataaggataagaagagaaaagagaaagtgaga
caagaagacgagaaacccggtgagggtgaagtggtcgcgttcaaagaactgaagaactac
cacaaggaacactacatgaggaggaacaaggagaagtctgagagcccagagaaagtcacg
gatacggaggacgtacccaaaactgagtcatcaaatgtgacagaagtggctgagaagaaa
gacgttgatcttaggatcttaccttcagtgcaggtgaaacctgcgactgttagtcataag
aggccgtcaactgaactgctagaagggaaagcgaagaagaataaacacgacaaatttgat
atcctcttcggaaatgaagacgtggatctccgccaactgccccaagtggaggaagtcacc
gccccgcctccgcccaccatcaaagactccccaaaaactgaggagaagatggatgaggat
gaaccggacgcgtcatctgctggaatgtcacgtcgcgggaccaaggttaccaaagaggag
gacgttgacctcagacaattacctcaagtagaagaacccacaacttccaaagctgtggag
tctcccaaacaaccacaatctgagaatgaaacggaggatgtggaaacaacagagatggcg
cctaataaggattggcacgaggtcaaagagaagtgtgatgacgtgaagaaggccccctct
aagttggacctggtgcgagccaaacttgcagaggcgacgaaagtcaaggacggattggga
agaccgcttttgttcagcaaatctccaagcgttgaaaaggaaagacgccgcacccttagc
tccgaagacatggacctcagaatggacaatcccgaggacttcgacgctgaagacaacaag
aagacgatatccataataatgaaccaagccaaggagcagtacaccgatggccatctagac
aagaaccaatacaacgccctgatgtaccaagtcttgcagctcaatgaaaaattgaaacta
aaagaggcgaagcaaagagaatctctagaacagtccaaaagaaaactaaaagcgaccata
gacaataataaaactgccagccctgagtcttctccaaacgaaaggaataatttcggtgat
attgacgagagaatcacaccggtaatatacttagacacccctccagatagccaacaagag
tatttgaaagactccgatatgagaatgtctcgccccatggactacgatggcaatagacaa
gggatggtccccatgccaccaaggatgcctccgttcaggcctttcaatgctgagagacat
ccggtttggagaggaaacaggcagagaatggaagagtttgcaccaagaaggttcagagga
cccaacccagcatacttcaggggaaaccgagctagaccaccttttgaaccaccaaggcct
ttactcccacctctgcctacaccgcagatggggatgtgtcaatctgaatcgcccttggtg
ccctacgaacggagcgccacacctccgcctctaggcgcccctgggatcgttataccgcca
actgattacagaatcttagagtacattgaccaagatccggtcaaaactatacagatcgat
ggaataccgagagagatcaggttttacggggaaaccgctgttataatgatggattgggac
gatccaagggagctgaaattcttgcccgggagccgtagagtcacgttcgataacaaggac
tcggtagttctatctttcaacgaaggttacaagcaagtggagattgacgatcaagtgttc
gatatgagattcggtgcgccaacaagggagttgtacataaacgggagatggttcgaatgt
ttcttcggcgggcagcctctgggagtaatcatagacgggaaacccagattggtgcattta
gaggggccgttgcctcaagtggatattggcaagaccaagcgacaggacttggtggcgggc
aaaatcaacctcatagtgaacgccacacacatgtgccccgtgtatttggacgccaaagtg
cagaagttccaggtgaacaatcagtttttcacgatccgcttcgtggattcgctacggact
gttctaattaatgagcaaccgttcaaagttgagtttggagatttgccgaagccggtcact
cttggcaatgagaagtattttatcagattctcggctctgccgaagttcatcaagccaggt
catgtccggatcgccaacatggagggctcgtcgttgtcgctgccgcttctggagatgccc
gtgctcggctttgagaagatccacgaccagaactctatggctgtggaccaggacgcctcg
aaacttcggaaaacgccaagtcccgaaggacaaggtctcgacatgctagccagcgtgatg
ccgtccagcatcgctccagcctcggcctccgagtacagctcagcggagcccttcttcgct
aaaccggacaagatcccgggactggagaccggggacgagaaaccggatccgatgaactcg
ttgctctctaacatgaatgtcaacgatctgtttgccaagctagtggccactgggttggtg
caagtgaaccagaacaaggaggaagccaaagtggagatcaatccggagaagccaaagccg
aaggaggacaggagtgttgtgcataaagtggacctgttgaggccggagacgcttaaagtt
aaacaaccagcattggtagccaaactgtacggcggaatgcaatgcagcggctgcggcgcc
agattcccgccagaacataccgtcagatacagccagcatctggactggcacttcaggcag
aacagaagggagagggattccgctagaagggcacattccagacattggcactatgacctt
tctgactgggtgcagtatgaggaagtcgaagatttggaagagagggaaaagagttggttc
gaaacgaattcgtctgcgcccgcgccggagctgcagccggagagcacagagcaggcgccg
agcgtggccgccggcgctctcgccgacgccgcctgcgctctgtgcggggacaagttcgac
caattctacaacgaggacaaggaggagtggcatctcaggaactccgtgaggcacaacgag
ctgaactaccatccgatgtgctacgaggactataaggcatcccaagcgaaagaggaacca
gagactgaggtcatcgaagaaatgcccatagacaagatagacccggaagatgccatagag
ataagagacacggatgatatcaactcccagtcggataatgagtctgtggtcgaggtcgtt
gaaccccctgaagttatcccggaggctgtagagatcgacgaaggcgacgaggacgacgtg
atctacaaggcggagccggtggagcaggttgtcgtagaagacgacgcggacacggacgac
gagaccgcgctctccagggccgagagagacaggcaggccgcggaaatgttcatgaacatc
aagattaaacaggagcctatcgatcctgacgacgagccaataatcacagcggaggaggaa
gtccccatcaccatcgcagacaccacgcgtaccacagtcacgtcatctatcgacggaaac
gtacaactcgaggctactccaatgccctccgttcctccgggaggaggcatacggataaac
atttcaaaagcacccacatttgccaataatgtccccgagccaatgttagaagacgtcagt
gcagacgatgagccgctgccgccgggtgaggaaccgcagctggagtataaattgaagccg
agtttggagggaatacgcttcagtaggcagccgccgactcaaagaggcgtcgagatgtcc
ggactgtgttccatcatgtga

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